Factsheet for Zm00001d030613_P003

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane

Predictor Summary:

golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plasma membrane
Any Predictor:	mitochondrion, secretory
MultiLoc:	golgi
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003674_P001
Zm00001d003675_P001
Zm00001d025412_P001
Zm00001d034777_P005

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54020.1	Zm00001d003674_P001	AT2G23420.1	21798944
AT3G54020.1	Zm00001d003675_P001	AT2G23420.1	21798944
AT3G54020.1	Zm00001d025412_P001	AT2G23420.1	21798944
AT3G54020.1	Zm00001d034777_P005	AT2G23420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG23698	Sorghum	mitochondrion	94.25	94.25
Zm00001d041608_P001	Maize	mitochondrion, plasma membrane	93.93	93.93
Zm00001d046198_P001	Maize	endoplasmic reticulum, plasma membrane	13.42	87.5
Os05t0287800-01	Rice	mitochondrion	85.3	85.3
VIT_08s0007g01510.t01	Wine grape	cytosol, golgi, mitochondrion, plasma membrane	70.29	69.62
PGSC0003DMT400049398	Potato	plasma membrane	62.94	69.12
CDX76176	Canola	mitochondrion	66.13	68.54
CDY13168	Canola	mitochondrion, plasma membrane	66.13	68.54
KRG88789	Soybean	cytosol, golgi, mitochondrion, plasma membrane	68.69	68.47
VIT_06s0004g05800.t01	Wine grape	mitochondrion	63.58	68.38
Bra014848.1-P	Field mustard	mitochondrion	65.81	68.21
AT3G54020.1	Thale cress	mitochondrion, plasma membrane	66.13	67.87
KRH75771	Soybean	cytosol, golgi, mitochondrion, peroxisome	68.05	67.83
KRH00099	Soybean	golgi	68.37	67.72
Zm00001d038343_P001	Maize	plasma membrane	69.01	67.71
AT2G37940.1	Thale cress	mitochondrion, plasma membrane	65.81	67.54
Bra000029.1-P	Field mustard	plasma membrane	63.26	66.89
KRH49241	Soybean	mitochondrion	67.41	66.56
Solyc10g086690.1.1	Tomato	cytosol, golgi, mitochondrion, plasma membrane	62.3	66.55
CDY18417	Canola	plasma membrane	64.22	65.9
Bra017148.1-P	Field mustard	plasma membrane	64.22	65.9
CDX93341	Canola	plasma membrane	63.9	65.57
PGSC0003DMT400028621	Potato	cytosol, golgi, plasma membrane	64.54	65.37
Solyc10g084990.1.1	Tomato	cytosol, golgi, mitochondrion, plasma membrane	64.86	65.06
CDY14501	Canola	mitochondrion, plasma membrane	64.22	65.05
CDY69104	Canola	mitochondrion, plasma membrane	64.22	65.05
CDY07761	Canola	mitochondrion, plasma membrane	63.9	64.94
Zm00001d012380_P002	Maize	plasma membrane	67.09	64.81
CDX74925	Canola	mitochondrion, plasma membrane	63.26	64.71
CDX91395	Canola	mitochondrion, plasma membrane	62.94	64.59
Bra005148.1-P	Field mustard	mitochondrion, plasma membrane	62.3	64.36
AT2G29525.1	Thale cress	plasma membrane	58.47	63.32
Solyc09g011740.2.1	Tomato	cytosol, endoplasmic reticulum, plasma membrane	63.58	62.97
PGSC0003DMT400052472	Potato	plasma membrane	62.62	62.03
Zm00001d042851_P003	Maize	golgi, plasma membrane, plastid	66.77	58.87
CDY18431	Canola	plasma membrane	40.26	54.31

Protein Annotations

EMBL:BT035086	EMBL:EU956107	EnsemblPlants:Zm00001d030613_P003	EnsemblPlants:Zm00001d030613_T003	EnsemblPlantsGene:Zm00001d030613	EntrezGene:100192955
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740
InterPro:Sphingomyelin_synth-like_dom	PANTHER:PTHR21290	PANTHER:PTHR21290:SF33	PFAM:PF14360	ProteinID:ONM01174.1	ProteinID:ONM01176.1
TMHMM:TMhelix	UniParc:UPI00017B66F4	UniProt:B4FD98	MapMan:5.4.13.1	:	:

Description

Phosphatidylinositol:ceramide inositolphosphotransferase 1

Coordinates

chr1:-:148632080..148635396

Molecular Weight (calculated)

35826.0 Da

IEP (calculated)

9.878

GRAVY (calculated)

0.136

Length

313 amino acids

Sequence
(BLAST)

001: MSPFYLARGA SKLVRRITSE TSVELKILSE KWRLLLAGVI FQYIHGLAAH GVHYLHRPGP TLQDLGFMIL PELGKERGYI SETLFTFIFL AFVLWTFHPF
101: ILQTKRFYTV LIWRRVLAFL CVSQFLRIIT FYATQLPGPN YHCREGSHLA RLPPPQNAAE VFLINFPRGV IYGCGDLIFS SHMIFTLVFV ITYQKYGSMR
201: FCKMLAWCVA IVQSLLIVSS RKHYSVDVVV AWYTVNLVVF FVDKKLTELP DRSVGSTSIL PLSAKDKDTK LKEENTRLLN GNSMDSADRR PRTQMNGKQI
301: DNESQVDSET VKA

Best Arabidopsis Sequence Match ( AT3G54020.1 )
(BLAST)

001: MTLYIRREAS KLWRRFCSEI TTEIGLLAEN WKYLLAGLLC QYIHGLAARG VHYIHRPGPT LQDSGFFVLP ELGQDKGFIS ETVFTCVFLS FFLWTFHPFI
101: VKSKKIYTVL IWCRVLAFLV ACQFLRVITF YSTQLPGPNY HCREGSELAR LPRPHNVLEV LLLNFPRGVI YGCGDLIFSS HMIFTLVFVR TYQKYGSKRF
201: IKLLGWVIAI LQSLLIIASR KHYTVDVVVA WYTVNLVVFF LDKKLPELPD RTTALLPVIS KDRTKEESHK LLNGNGVDPA DRRPRAQVNG KDSNGGHTDN
301: ATNGT

Arabidopsis Description

IPCS1Phosphatidylinositol:ceramide inositolphosphotransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M325]
SUBAcon: [mitochondrion,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.