Factsheet for VIT_00s0287g00080.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
mitochondrion 2
extracellular 2
nucleus 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57501	Soybean	plasma membrane	27.3	45.02
PGSC0003DMT400067515	Potato	nucleus	28.45	45.0
CDY28969	Canola	cytosol	27.87	44.5
CDY40565	Canola	cytosol	27.87	44.5
PGSC0003DMT400052797	Potato	cytosol	27.3	44.19
Solyc08g007200.2.1	Tomato	unclear	27.3	44.19
Solyc08g078000.2.1	Tomato	nucleus	27.87	44.09
Bra022110.1-P	Field mustard	cytosol	27.59	44.04
KRH04206	Soybean	cytosol	27.87	43.69
AT5G47180.1	Thale cress	cytosol	27.3	43.18
CDX77746	Canola	cytosol	27.01	43.12
CDY33519	Canola	cytosol	27.01	43.12
CDY43438	Canola	cytosol	27.01	42.73
CDY25982	Canola	cytosol	26.72	42.27
Bra022111.1-P	Field mustard	cytosol	26.72	42.27
Bra017499.1-P	Field mustard	cytosol	26.72	42.27
KRH28185	Soybean	cytosol, golgi, nucleus	26.44	42.01
Bra024958.1-P	Field mustard	cytosol	26.15	41.74
GSMUA_Achr11P...	Banana	cytosol	25.57	38.7
KRH77304	Soybean	plasma membrane, vacuole	27.01	37.75
GSMUA_Achr5P18320_001	Banana	cytosol, nucleus, plasma membrane	24.71	36.91
TraesCS6B01G282300.1	Wheat	cytosol, golgi, plasma membrane	23.56	35.34
TraesCS6D01G224100.1	Wheat	cytosol, golgi, plasma membrane	23.56	35.34
TraesCS6A01G242200.1	Wheat	cytosol, golgi, plasma membrane	23.56	35.34
Os10t0549100-01	Rice	plasma membrane	22.41	33.48
Os02t0652550-00	Rice	cytosol	23.28	30.34
HORVU6Hr1G062050.9	Barley	mitochondrion	23.85	28.52
Zm00001d051329_P002	Maize	mitochondrion, plasma membrane, plastid	24.14	27.81
VIT_02s0154g00500.t01	Wine grape	cytosol, nucleus, plasma membrane	18.97	27.73
VIT_15s0048g00600.t01	Wine grape	cytosol, nucleus, plasma membrane	18.97	27.62
Zm00001d014260_P001	Maize	plastid	14.08	27.53
VIT_15s0048g00220.t01	Wine grape	cytosol, nucleus, plasma membrane	18.68	27.2
Zm00001d017448_P001	Maize	endoplasmic reticulum, golgi, plastid	24.14	27.1
EES05798	Sorghum	plastid	24.43	26.23
VIT_05s0020g01970.t01	Wine grape	cytosol	17.82	21.16
VIT_13s0106g00400.t01	Wine grape	cytosol	7.47	19.12
TraesCS2B01G214400.1	Wheat	mitochondrion	13.51	17.54
VIT_14s0030g00730.t01	Wine grape	cytosol	16.67	17.26

Protein Annotations

Gene3D:2.60.40.10	MapMan:35.1	ProteinID:CBI23402.3	ncoils:Coil	UniProt:E0CW13	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020
GO:GO:0016021	InterPro:IPR000535	InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:MSP_dom	PFscan:PS50202
PANTHER:PTHR10809	PANTHER:PTHR10809:SF42	InterPro:PapD-like_sf	SUPFAM:SSF49354	TMHMM:TMhelix	UniParc:UPI0001BE1E73
InterPro:VAP	ArrayExpress:VIT_00s0287g00080	EnsemblPlantsGene:VIT_00s0287g00080	EnsemblPlants:VIT_00s0287g00080.t01	SEG:seg	:

Description

Plant VAMP (vesicle-associated membrane protein) family protein [Source:TAIR;Acc:AT5G47180](projected from arabidopsis_thaliana,AT5G47180)

Coordinates

chrUn:+:21604652..21608898

Molecular Weight (calculated)

21867.2 Da

IEP (calculated)

8.066

GRAVY (calculated)

-0.159

Length

348 amino acids

Sequence
(BLAST)

001: MNSNFNLSWT NKVIVILKLS TTQNITLLLR SKPHHLRSTL FDPIPGVIQP WDACVIXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
101: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
201: XXXXXXXXXX PDMQCKDKFL LQSTIVPPHT DLDELPQDAF NKDSGKVIEE CKLRVVYTLA NRNSGDGSFA SSNENADYNS NPTLQSLKEE RDSAVRQTQQ
301: LQQELELLKR RRYPKSSGFS FRFALLVALI GIMVGFLLNL SLSSPSTE

Best Arabidopsis Sequence Match ( AT5G47180.1 )
(BLAST)

001: MTGVGENQLI SIQPDELKFL FELEKQSYCD LKVANKTENY VAFKVKTTSP KKYFVRPNTG VIQPWDSCII RVTLQAQREY PPDMQCKDKF LLQSTIVPPH
101: TDVDELPQDT FTKDSGKTLT ECKLKVSYIT PSTTQRSSES GATNGDGQSS ETISTIQRLK EERDAAVKQT QQLQHELETV RRRRNQRNSG NGLSLKLAAM
201: VGLIGLIIGF ILKLTLASPT

Arabidopsis Description

PVA21Vesicle-associated protein 2-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVU1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.