Factsheet for GSMUA_Achr5P18320_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plasma membrane

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	84.98	86.09
TraesCS6D01G224100.1	Wheat	cytosol, golgi, plasma membrane	68.24	68.53
TraesCS6B01G282300.1	Wheat	cytosol, golgi, plasma membrane	68.24	68.53
TraesCS6A01G242200.1	Wheat	cytosol, golgi, plasma membrane	67.81	68.1
Os10t0549100-01	Rice	plasma membrane	67.81	67.81
Os02t0652550-00	Rice	cytosol	67.81	59.18
KRH28185	Soybean	cytosol, golgi, nucleus	54.08	57.53
KRH04206	Soybean	cytosol	54.08	56.76
Bra022110.1-P	Field mustard	cytosol	52.79	56.42
CDY28969	Canola	cytosol	52.79	56.42
CDY40565	Canola	cytosol	52.79	56.42
KRH57501	Soybean	plasma membrane	51.07	56.4
AT5G47180.1	Thale cress	cytosol	52.79	55.91
PGSC0003DMT400067515	Potato	nucleus	52.79	55.91
CDY33519	Canola	cytosol	51.93	55.5
HORVU6Hr1G062050.9	Barley	mitochondrion	69.1	55.33
CDX77746	Canola	cytosol	51.5	55.05
Solyc08g078000.2.1	Tomato	nucleus	51.93	55.0
Bra022111.1-P	Field mustard	cytosol	51.93	55.0
Bra024958.1-P	Field mustard	cytosol	51.07	54.59
CDY43438	Canola	cytosol	51.07	54.09
Zm00001d051329_P002	Maize	mitochondrion, plasma membrane, plastid	69.53	53.64
Bra017499.1-P	Field mustard	cytosol	50.64	53.64
CDY25982	Canola	cytosol	50.64	53.64
Solyc08g007200.2.1	Tomato	unclear	49.36	53.49
PGSC0003DMT400052797	Potato	cytosol	48.93	53.02
Zm00001d017448_P001	Maize	endoplasmic reticulum, golgi, plastid	69.53	52.26
EES05798	Sorghum	plastid	70.39	50.62
KRH77304	Soybean	plasma membrane, vacuole	53.22	49.8
Zm00001d014260_P001	Maize	plastid	37.34	48.88
GSMUA_Achr1P20230_001	Banana	cytosol	40.34	39.66
GSMUA_Achr7P07100_001	Banana	cytosol	39.48	38.66
GSMUA_Achr6P36770_001	Banana	cytosol	34.33	38.28
GSMUA_Achr5P20880_001	Banana	cytosol	36.91	35.98
GSMUA_Achr1P20280_001	Banana	cytosol	32.62	35.51
GSMUA_Achr1P04220_001	Banana	cytosol, nucleus, plasma membrane	36.05	35.29
GSMUA_Achr7P06650_001	Banana	cytosol	32.19	34.72
GSMUA_Achr11P...	Banana	cytosol, nucleus, plasma membrane	35.19	34.31
GSMUA_Achr1P05960_001	Banana	cytosol, golgi, plasma membrane	35.19	34.17
TraesCS2B01G214400.1	Wheat	mitochondrion	37.77	32.84
GSMUA_Achr11P...	Banana	cytosol	26.18	30.5
GSMUA_Achr8P11120_001	Banana	cytosol	35.19	29.29
GSMUA_Achr8P21990_001	Banana	cytosol	34.76	26.91
GSMUA_Achr10P...	Banana	cytosol	33.05	25.67
VIT_00s0287g00080.t01	Wine grape	extracellular	36.91	24.71
GSMUA_Achr3P08840_001	Banana	cytosol	24.03	23.33

Protein Annotations

Gene3D:2.60.40.10	MapMan:20.7.1	ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSMUA_Achr5G18320_001
EnsemblPlants:GSMUA_Achr5P18320_001	EnsemblPlants:GSMUA_Achr5T18320_001	InterPro:IPR000535	InterPro:IPR013783	InterPro:Ig-like_fold	UniProt:M0SZL1
InterPro:MSP_dom	PFAM:PF00635	PIRSF:PIRSF019693	PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF42
InterPro:PapD-like_sf	SUPFAM:SSF49354	TMHMM:TMhelix	UniParc:UPI0002947F8D	InterPro:VAP	SEG:seg

Description

Putative Vesicle-associated membrane protein-associated protein B [Source:GMGC_GENE;Acc:GSMUA_Achr5G18320_001]

Coordinates

chr5:-:19774855..19777239

Molecular Weight (calculated)

26040.8 Da

IEP (calculated)

6.793

GRAVY (calculated)

-0.476

Length

233 amino acids

Sequence
(BLAST)

001: MSAGGQMISV HPEELTFELE LEKPSYCNIK VANNTEHHVA FKVKTTSPTK YFVRPNASVV QPWDSCTVTV SHQAQKEYPP DMQCKDKFLI QSAKVPPSSD
101: MDEIPSDTFN KDSAKVIEEL KLRVVYTFPS QSGHANSEEE SGLASSASGR RGSDMFKNSS IEEIQTLQRL KEERDAILQQ NHQFQRELDI LKRRRNRKSD
201: TGFSLTFAAF AGLVGIMVGF ILNLILSTPP ATA

Best Arabidopsis Sequence Match ( AT5G47180.2 )
(BLAST)

001: MTGVGENQLI SIQPDELKFL FELEKQSYCD LKVANKTENY VAFKVKTTSP KKYFVRPNTG VIQPWDSCII RVTLQAQREY PPDMQCKDKF LLQSTIVPPH
101: TDVDELPQDT FTKDSGKTLT ECKLKVSYIT PSTTQRSSES GATNGDGQSS ETISTIQRLK EERDAAVKQT QQLQHELETV RRRRNQRNSG NGLSLKLAAM
201: VGLIGLIIGF ILKLTLASPT

Arabidopsis Description

PVA21Vesicle-associated protein 2-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVU1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.