Factsheet for GSMUA_Achr10P05390_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P21990_001	Banana	cytosol	76.67	76.41
GSMUA_Achr3P08840_001	Banana	cytosol	53.0	66.25
GSMUA_Achr5P20880_001	Banana	cytosol	38.33	48.12
GSMUA_Achr11P...	Banana	cytosol, nucleus, plasma membrane	37.33	46.86
VIT_05s0020g01970.t01	Wine grape	cytosol	45.0	46.08
GSMUA_Achr1P20280_001	Banana	cytosol	32.67	45.79
VIT_14s0030g00730.t01	Wine grape	cytosol	50.0	44.64
GSMUA_Achr1P20230_001	Banana	cytosol	35.0	44.3
KRH02189	Soybean	cytosol	43.33	44.07
GSMUA_Achr6P36770_001	Banana	cytosol	30.67	44.02
KRH50932	Soybean	cytosol	43.0	43.73
KRH11275	Soybean	cytosol	40.33	43.53
PGSC0003DMT400057834	Potato	cytosol	45.33	43.04
GSMUA_Achr11P...	Banana	cytosol	28.67	43.0
GSMUA_Achr1P04220_001	Banana	cytosol, nucleus, plasma membrane	33.67	42.44
Solyc01g098200.2.1	Tomato	cytosol	44.33	42.09
Os01t0936800-01	Rice	cytosol, plasma membrane	52.33	41.32
GSMUA_Achr7P07100_001	Banana	cytosol	32.33	40.76
EES04183	Sorghum	cytosol	49.33	39.26
GSMUA_Achr1P05960_001	Banana	cytosol, golgi, plasma membrane	31.33	39.17
TraesCS3A01G467600.2	Wheat	cytosol	47.33	39.12
TraesCS3B01G511900.2	Wheat	cytosol	47.33	39.12
TraesCS3D01G462100.3	Wheat	cytosol	47.33	39.12
GSMUA_Achr7P06650_001	Banana	cytosol	28.0	38.89
GSMUA_Achr8P11120_001	Banana	cytosol	35.67	38.21
Zm00001d011904_P001	Maize	cytosol	49.33	37.85
HORVU3Hr1G099730.5	Barley	cytosol	47.33	37.77
Zm00001d042180_P002	Maize	cytosol	49.0	36.66
KXG21863	Sorghum	cytosol	44.0	36.46
PGSC0003DMT400027619	Potato	cytosol	43.0	36.34
GSMUA_Achr11P...	Banana	cytosol	27.0	35.22
Zm00001d010495_P002	Maize	cytosol	44.33	35.0
Bra018597.1-P	Field mustard	cytosol	42.0	33.96
CDX93534	Canola	cytosol	42.0	33.96
Bra031641.1-P	Field mustard	cytosol	38.67	33.82
CDX95029	Canola	cytosol	42.0	33.69
CDY06330	Canola	cytosol	38.33	33.53
CDY32136	Canola	cytosol	42.0	33.16
CDY31124	Canola	cytosol	42.0	33.07
GSMUA_Achr5P18320_001	Banana	cytosol, nucleus, plasma membrane	25.67	33.05
Bra030744.1-P	Field mustard	cytosol	42.0	32.06
Solyc01g067720.2.1	Tomato	plastid	43.67	31.64
AT1G08820.3	Thale cress	cytosol	40.67	31.61
CDY22664	Canola	plasma membrane	40.67	28.77
Os05t0373000-01	Rice	cytosol	45.0	28.3
KRG92793	Soybean	cytosol	39.33	24.53
KRH34006	Soybean	cytosol	40.0	22.64

Protein Annotations

Gene3D:2.60.40.10	MapMan:20.7.1	ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSMUA_Achr10G05390_001
EnsemblPlants:GSMUA_Achr10P05390_001	EnsemblPlants:GSMUA_Achr10T05390_001	InterPro:IPR000535	InterPro:IPR013783	InterPro:Ig-like_fold	UniProt:M0RFL6
InterPro:MSP_dom	PFAM:PF00635	PIRSF:PIRSF019693	PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF45
InterPro:PapD-like_sf	SUPFAM:SSF49354	TMHMM:TMhelix	UniParc:UPI000296FA9F	InterPro:VAP	:

Description

MSP domain containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G05390_001]

Coordinates

chr10:-:15145586..15155073

Molecular Weight (calculated)

33562.5 Da

IEP (calculated)

6.259

GRAVY (calculated)

-0.236

Length

300 amino acids

Sequence
(BLAST)

001: MGLGQVLVEI QPQELKFAFE LKKQISCTVQ LVNKSTDYVA YKVKTTSPKR YCVRPNTGII LPRSTCDFTV TMQAPKEVPP DMQLKDKFLV QSTVVPYGTT
101: DEDIMPSFFS KENGRYIQEN KLRVVLASPP HSPVVEPING VRQEPALENP DSAETCIFDD GALQHELANE VPILRKTSVL HNGAPKHEAI HENPLLEKAC
201: ISSNQALNEV PDIISSPVAK DIDDLKFKLN NLEVKLNEAE KTIMSLKKEN NATLQEGEKL QQEIALLRLK SSARVQAGFP FLFVVFIAFV SMTLGYLWHS

Best Arabidopsis Sequence Match ( AT1G08820.2 )
(BLAST)

001: MNMPLLDIQP RTLQFAVDLK KQTSCVVQLT NTTHHYVAFK VKTTSPKKYC VRPNVGVVAP KSTCEFTVIM QAFKEPPPDM VCKDKFLIQS TAVSAETTDE
101: DITASMFSKA EGKHIEENKL RVTLVPPSDS PELSPINTPK QGAVFEDSIL KDRLYSQSET LAPPQYEGEI VKEPRMVGHD ELKAADNAKE LKTPKMATVD
201: FVEDRYTAND LKATKDSYDS SRMAKETGFD PIRSHKDADD GRAIKATTNL DAPMKKAMDL PRDQGFTNGI AVDSEPKISK ERDVVQLQKT DGQNVRGLDE
301: LKLVKDIEEM KLKVDALESK LKQADSTISK LMEERSISSQ HRQSLQHELA ELRTKKIVKE VHNGFPLLYV CVVAFIAYVI GHFLRT

Arabidopsis Description

PVA22VAP27-2 [Source:UniProtKB/TrEMBL;Acc:A0A178WBB7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.