Factsheet for Solyc01g067720.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 6
endoplasmic reticulum 1
cytosol 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400027619	Potato	cytosol	79.95	93.24
VIT_05s0020g01970.t01	Wine grape	cytosol	37.2	52.56
KRH02189	Soybean	cytosol	35.99	50.51
KRH50932	Soybean	cytosol	35.75	50.17
KRH11275	Soybean	cytosol	31.88	47.48
Solyc01g090910.2.1	Tomato	nucleus	25.36	45.06
GSMUA_Achr8P21990_001	Banana	cytosol	32.13	44.19
Solyc01g090990.2.1	Tomato	nucleus, plastid, unclear	25.36	43.75
GSMUA_Achr10P...	Banana	cytosol	31.64	43.67
GSMUA_Achr3P08840_001	Banana	cytosol	25.12	43.33
Solyc10g018350.1.1	Tomato	cytosol	24.4	42.44
Solyc08g078690.2.1	Tomato	cytosol	22.71	42.34
Solyc01g098200.2.1	Tomato	cytosol	31.4	41.14
Solyc08g078000.2.1	Tomato	nucleus	21.5	40.45
Solyc08g007200.2.1	Tomato	unclear	20.29	39.07
Solyc06g034220.2.1	Tomato	nucleus	21.01	38.33
TraesCS3A01G467600.2	Wheat	cytosol	33.57	38.29
TraesCS3D01G462100.3	Wheat	cytosol	33.57	38.29
EES04183	Sorghum	cytosol	34.78	38.2
Os01t0936800-01	Rice	cytosol, plasma membrane	35.02	38.16
TraesCS3B01G511900.2	Wheat	cytosol	33.33	38.02
HORVU3Hr1G099730.5	Barley	cytosol	33.33	36.7
Zm00001d011904_P001	Maize	cytosol	34.54	36.57
Zm00001d042180_P002	Maize	cytosol	34.06	35.16
KXG21863	Sorghum	cytosol	30.43	34.81
Solyc08g007390.2.1	Tomato	unclear	15.7	32.34
Zm00001d010495_P002	Maize	cytosol	29.23	31.84
Os05t0373000-01	Rice	cytosol	28.02	24.32

Protein Annotations

Gene3D:2.60.40.10	MapMan:20.7.1	ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	GO:GO:0016021	InterPro:IPR000535
InterPro:IPR013783	InterPro:Ig-like_fold	UniProt:K4AX20	InterPro:MSP_dom	PFAM:PF00635	PFscan:PS50202
PANTHER:PTHR10809	PANTHER:PTHR10809:SF45	InterPro:PapD-like_sf	SUPFAM:SSF49354	EnsemblPlantsGene:Solyc01g067720.2	EnsemblPlants:Solyc01g067720.2.1
TMHMM:TMhelix	UniParc:UPI000276316B	InterPro:VAP	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:-:76658306..76663454

Molecular Weight (calculated)

46324.9 Da

IEP (calculated)

5.411

GRAVY (calculated)

-0.261

Length

414 amino acids

Sequence
(BLAST)

001: MITPLTVPNP FGFKSSPFLQ LLFSLSSHCF RSTTISLTHW LSPELEDCAI SSSEFEYLIM INTQLVEIQP CELEFTFEVK KQSSCAVHIS NITDQYVAFK
101: VKTTSPKKYC VRPNIGVIKP KSTYDFTVTM QAQRAAPSDM QCKDKFLIQC TVVPFGTNEE EIPPSMFNKD NGKYIDECKL KVVLVSPSQS LVLQPANGIS
201: KQGASVETSM QQEKFPSGVE NLPPAQTVVK NNKDIKFEEE TEEPRLVNIA DVKDLNLTKN TKSSIGEIDE TICQVVENNK GADFDAEEEE PRLAKTAEDI
301: QLNLPKNRES NANEVEVVKS RHLNMETKLS LSKDVEELKS KINSLGSQLI EAECIIAKLK EQKRSTIKDM EILKQELALL KTKGVGKRVQ VGFPPLFLCM
401: VALICLTIGY LVRA

Best Arabidopsis Sequence Match ( AT1G08820.2 )
(BLAST)

001: MNMPLLDIQP RTLQFAVDLK KQTSCVVQLT NTTHHYVAFK VKTTSPKKYC VRPNVGVVAP KSTCEFTVIM QAFKEPPPDM VCKDKFLIQS TAVSAETTDE
101: DITASMFSKA EGKHIEENKL RVTLVPPSDS PELSPINTPK QGAVFEDSIL KDRLYSQSET LAPPQYEGEI VKEPRMVGHD ELKAADNAKE LKTPKMATVD
201: FVEDRYTAND LKATKDSYDS SRMAKETGFD PIRSHKDADD GRAIKATTNL DAPMKKAMDL PRDQGFTNGI AVDSEPKISK ERDVVQLQKT DGQNVRGLDE
301: LKLVKDIEEM KLKVDALESK LKQADSTISK LMEERSISSQ HRQSLQHELA ELRTKKIVKE VHNGFPLLYV CVVAFIAYVI GHFLRT

Arabidopsis Description

PVA22VAP27-2 [Source:UniProtKB/TrEMBL;Acc:A0A178WBB7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.