Factsheet for Solyc01g090910.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
endoplasmic reticulum 1
cytosol 1
plasma membrane 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025
endoplasmic reticulum: 29145071

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_15s0048g00220.t01	Wine grape	cytosol, nucleus, plasma membrane	77.25	75.31
PGSC0003DMT400066920	Potato	cytosol	84.98	74.16
Solyc10g018350.1.1	Tomato	cytosol	75.54	73.95
KRH76164	Soybean	endoplasmic reticulum	73.39	70.95
KRH65384	Soybean	cytosol	73.39	70.95
Bra003313.1-P	Field mustard	cytosol	67.38	70.4
CDY37029	Canola	cytosol, golgi, plasma membrane	72.1	70.29
Bra040323.1-P	Field mustard	cytosol, golgi, plasma membrane	71.67	69.87
CDY27392	Canola	cytosol, golgi, plasma membrane	71.24	69.46
CDX89063	Canola	cytosol, golgi, plasma membrane	70.39	68.62
CDX71796	Canola	cytosol	69.96	68.49
Bra007547.1-P	Field mustard	cytosol	69.96	68.49
CDY41153	Canola	cytosol	69.96	68.49
CDX67837	Canola	cytosol, golgi, plasma membrane	70.39	68.33
Bra003423.1-P	Field mustard	cytosol, golgi, plasma membrane	70.39	68.33
CDY48365	Canola	cytosol	69.96	68.2
Bra014481.1-P	Field mustard	cytosol, golgi, plasma membrane	69.96	68.2
CDY56247	Canola	cytosol	69.96	67.92
CDY57247	Canola	cytosol	69.53	67.5
GSMUA_Achr5P20880_001	Banana	cytosol	68.24	66.53
GSMUA_Achr11P...	Banana	cytosol, nucleus, plasma membrane	68.24	66.53
CDX83400	Canola	cytosol, nucleus, plasma membrane	68.67	66.39
CDX95631	Canola	cytosol, golgi, plasma membrane	68.24	65.98
Os08t0156700-01	Rice	plasma membrane	67.81	65.02
Solyc08g078690.2.1	Tomato	cytosol	60.52	63.51
Zm00001d049553_P001	Maize	plasma membrane	65.67	62.7
GSMUA_Achr1P20280_001	Banana	cytosol	57.08	62.15
TraesCS7D01G296400.1	Wheat	cytosol	64.81	62.14
EES14570	Sorghum	cytosol, nucleus, plasma membrane	64.81	61.89
TraesCS7A01G300700.1	Wheat	cytosol	64.38	61.73
EES12559	Sorghum	cytosol	64.81	60.64
Os04t0534400-01	Rice	cytosol	64.81	60.4
HORVU2Hr1G091830.4	Barley	cytosol	63.09	59.04
TraesCS2A01G368500.1	Wheat	cytosol	63.09	59.04
Solyc01g090990.2.1	Tomato	nucleus, plastid, unclear	60.52	58.75
TraesCS2B01G385700.2	Wheat	cytosol	62.66	58.63
TraesCS2D01G365300.2	Wheat	cytosol	62.23	58.23
TraesCS6D01G220300.1	Wheat	cytosol	55.79	57.02
HORVU6Hr1G060760.3	Barley	cytosol, golgi, plasma membrane	55.36	56.58
TraesCS6A01G237600.1	Wheat	cytosol, golgi, plasma membrane	55.36	56.58
TraesCS6B01G266100.1	Wheat	cytosol, golgi, plasma membrane	55.36	56.58
Zm00001d017390_P001	Maize	cytosol	54.08	56.0
Zm00001d051288_P001	Maize	cytosol	53.65	55.56
Solyc06g034220.2.1	Tomato	nucleus	54.08	55.51
KXG31128	Sorghum	cytosol	53.22	55.11
GSMUA_Achr11P...	Banana	cytosol	46.78	54.5
Solyc08g007390.2.1	Tomato	unclear	45.92	53.23
GSMUA_Achr8P11120_001	Banana	cytosol	62.66	52.14
HORVU7Hr1G071270.2	Barley	mitochondrion	64.38	50.85
Os02t0643000-01	Rice	plasma membrane	56.22	50.58
Zm00001d025939_P003	Maize	cytosol, golgi, plasma membrane	62.23	48.66
Bra035442.1-P	Field mustard	cytosol	21.46	46.3
Solyc08g078000.2.1	Tomato	nucleus	40.77	43.18
Solyc08g007200.2.1	Tomato	unclear	39.48	42.79
Zm00001d036342_P001	Maize	cytosol	42.06	39.2
CDY44556	Canola	cytosol, extracellular, plastid	16.74	38.24
Solyc01g098200.2.1	Tomato	cytosol	44.21	32.59
Solyc01g067720.2.1	Tomato	plastid	45.06	25.36
AT1G51270.3	Thale cress	cytosol	54.94	20.09

Protein Annotations

Gene3D:2.60.40.10	MapMan:20.7.1	ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	GO:GO:0016021	InterPro:IPR000535
InterPro:IPR013783	InterPro:Ig-like_fold	UniProt:K4AZ32	InterPro:MSP_dom	PFAM:PF00635	PIRSF:PIRSF019693
PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF94	InterPro:PapD-like_sf	SUPFAM:SSF49354	EnsemblPlantsGene:Solyc01g090910.2
EnsemblPlants:Solyc01g090910.2.1	TMHMM:TMhelix	UniParc:UPI0002767E26	InterPro:VAP	SEG:seg	:

Description

No Description!

Coordinates

chr1:+:84616786..84621894

Molecular Weight (calculated)

26094.5 Da

IEP (calculated)

9.117

GRAVY (calculated)

-0.489

Length

233 amino acids

Sequence
(BLAST)

001: MSNGELLQIE PVEITFTFEL KKQISCSLQL SNKSDDYVAF KVKTTNPKKY CVRPNTGIVM PRSTCEVTVT MQAQKEAPPD MQCKDKFLLQ SVIVSPRTTA
101: KDITPEMFNK ESGNHVEEVK LRVAYVLPKP PSPVREGSEE GSSPRASISE NGAEFHNASR TYAEPQDNSS ETKALILKLS EEKKSAIQQN NKLQQELELL
201: RRESSKRRGG IPFMYVIIVG LVGLLLGYLL KKT

Best Arabidopsis Sequence Match ( AT3G60600.1 )
(BLAST)

001: MSNIDLIGMS NRDLIGMSNS ELLTVEPLDL QFPFELKKQI SCSLYLTNKT DNNVAFKVKT TNPKKYCVRP NTGVVLPRST CEVLVTMQAQ KEAPSDMQCK
101: DKFLLQGVIA SPGVTAKEVT PEMFSKEAGH RVEETKLRVT YVAPPRPPSP VHEGSEEGSS PRASVSDNGH GSEFSFERFI VDNKAGHQEN TSEARALITK
201: LTEEKQSAIQ LNNRLQRELD QLRRESKKSQ SGGIPFMYVL LVGLIGLILG YIMKRT

Arabidopsis Description

PVA11Vesicle-associated protein 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ95]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.