Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P21990_001 | Banana | cytosol | 67.5 | 53.82 |
| GSMUA_Achr10P... | Banana | cytosol | 66.25 | 53.0 |
| GSMUA_Achr6P36770_001 | Banana | cytosol | 35.0 | 40.19 |
| GSMUA_Achr11P... | Banana | cytosol | 30.42 | 36.5 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plasma membrane | 35.83 | 35.98 |
| GSMUA_Achr1P20230_001 | Banana | cytosol | 35.42 | 35.87 |
| GSMUA_Achr5P20880_001 | Banana | cytosol | 35.0 | 35.15 |
| VIT_05s0020g01970.t01 | Wine grape | cytosol | 41.67 | 34.13 |
| GSMUA_Achr1P04220_001 | Banana | cytosol, nucleus, plasma membrane | 33.75 | 34.03 |
| GSMUA_Achr1P05960_001 | Banana | cytosol, golgi, plasma membrane | 33.75 | 33.75 |
| GSMUA_Achr1P20280_001 | Banana | cytosol | 30.0 | 33.64 |
| KRH50932 | Soybean | cytosol | 40.83 | 33.22 |
| KRH02189 | Soybean | cytosol | 40.83 | 33.22 |
| KRH11275 | Soybean | cytosol | 38.33 | 33.09 |
| GSMUA_Achr7P06650_001 | Banana | cytosol | 29.17 | 32.41 |
| Os01t0936800-01 | Rice | cytosol, plasma membrane | 50.0 | 31.58 |
| GSMUA_Achr7P07100_001 | Banana | cytosol | 31.25 | 31.51 |
| TraesCS3B01G511900.2 | Wheat | cytosol | 47.08 | 31.13 |
| TraesCS3A01G467600.2 | Wheat | cytosol | 47.08 | 31.13 |
| TraesCS3D01G462100.3 | Wheat | cytosol | 47.08 | 31.13 |
| GSMUA_Achr8P11120_001 | Banana | cytosol | 36.25 | 31.07 |
| EES04183 | Sorghum | cytosol | 48.75 | 31.03 |
| VIT_14s0030g00730.t01 | Wine grape | cytosol | 42.92 | 30.65 |
| HORVU3Hr1G099730.5 | Barley | cytosol | 47.5 | 30.32 |
| Zm00001d011904_P001 | Maize | cytosol | 48.75 | 29.92 |
| Zm00001d042180_P002 | Maize | cytosol | 49.17 | 29.43 |
| PGSC0003DMT400057834 | Potato | cytosol | 38.33 | 29.11 |
| Solyc01g098200.2.1 | Tomato | cytosol | 37.92 | 28.8 |
| PGSC0003DMT400027619 | Potato | cytosol | 42.5 | 28.73 |
| KXG21863 | Sorghum | cytosol | 40.83 | 27.07 |
| GSMUA_Achr11P... | Banana | cytosol | 25.83 | 26.96 |
| CDY32136 | Canola | cytosol | 41.25 | 26.05 |
| Zm00001d010495_P002 | Maize | cytosol | 41.25 | 26.05 |
| CDY31124 | Canola | cytosol | 41.25 | 25.98 |
| Bra018597.1-P | Field mustard | cytosol | 40.0 | 25.88 |
| CDX93534 | Canola | cytosol | 40.0 | 25.88 |
| CDX95029 | Canola | cytosol | 40.0 | 25.67 |
| Bra030744.1-P | Field mustard | cytosol | 41.67 | 25.45 |
| Bra031641.1-P | Field mustard | cytosol | 36.25 | 25.36 |
| CDY06330 | Canola | cytosol | 36.25 | 25.36 |
| AT1G08820.3 | Thale cress | cytosol | 40.42 | 25.13 |
| Solyc01g067720.2.1 | Tomato | plastid | 43.33 | 25.12 |
| GSMUA_Achr5P18320_001 | Banana | cytosol, nucleus, plasma membrane | 23.33 | 24.03 |
| CDY22664 | Canola | plasma membrane | 38.33 | 21.7 |
| Os05t0373000-01 | Rice | cytosol | 41.67 | 20.96 |
| KRG92793 | Soybean | cytosol | 40.83 | 20.37 |
| KRH34006 | Soybean | cytosol | 42.08 | 19.06 |
Protein Annotations
| Gene3D:2.60.40.10 | MapMan:20.7.1 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | EnsemblPlantsGene:GSMUA_Achr3G08840_001 | EnsemblPlants:GSMUA_Achr3P08840_001 |
| EnsemblPlants:GSMUA_Achr3T08840_001 | InterPro:IPR000535 | InterPro:IPR013783 | InterPro:Ig-like_fold | UniProt:M0SD01 | InterPro:MSP_dom |
| PFAM:PF00635 | PFscan:PS50202 | PANTHER:PTHR10809 | PANTHER:PTHR10809:SF45 | InterPro:PapD-like_sf | SUPFAM:SSF49354 |
| UniParc:UPI000295096D | InterPro:VAP | SEG:seg | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G08840_001]
Coordinates
chr3:+:6397879..6400860
Molecular Weight (calculated)
27180.5 Da
IEP (calculated)
4.732
GRAVY (calculated)
-0.363
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTGQVLVEI QPQEELRFTF ELRKQSFCSV QLVNISNDYV AFKVKTTSPK RYCVQPNMGI ILPRSTCNFT VTMQAPKETP CDMQLKDKFL VQSTVIPFGT
101: TDEDIVPSFF FKENGKYIQE NKLRVALISH LHPPPPENRT LRQEPAHDIP DLAEISIATN GILKHEPAEE VPILIETSIS NSGVLKQELD HEREMSKETC
201: YFSDQTLGGV ADVTPSLVAE DIDELKLKLN NLEAKFNEVR
101: TDEDIVPSFF FKENGKYIQE NKLRVALISH LHPPPPENRT LRQEPAHDIP DLAEISIATN GILKHEPAEE VPILIETSIS NSGVLKQELD HEREMSKETC
201: YFSDQTLGGV ADVTPSLVAE DIDELKLKLN NLEAKFNEVR
001: MNMPLLDIQP RTLQFAVDLK KQTSCVVQLT NTTHHYVAFK VKTTSPKKYC VRPNVGVVAP KSTCEFTVIM QAFKEPPPDM VCKDKFLIQS TAVSAETTDE
101: DITASMFSKA EGKHIEENKL RVTLVPPSDS PELSPINTPK QGAVFEDSIL KDRLYSQSET LAPPQYEGEI VKEPRMVGHD ELKAADNAKE LKTPKMATVD
201: FVEDRYTAND LKATKDSYDS SRMAKETGFD PIRSHKDADD GRAIKATTNL DAPMKKAMDL PRDQGFTNGI AVDSEPKISK ERDVVQLQKT DGQNVRGLDE
301: LKLVKDIEEM KLKVDALESK LKQADSTISK LMEERSISSQ HRQSLQHELA ELRTKKIVKE VHNGFPLLYV CVVAFIAYVI GHFLRT
101: DITASMFSKA EGKHIEENKL RVTLVPPSDS PELSPINTPK QGAVFEDSIL KDRLYSQSET LAPPQYEGEI VKEPRMVGHD ELKAADNAKE LKTPKMATVD
201: FVEDRYTAND LKATKDSYDS SRMAKETGFD PIRSHKDADD GRAIKATTNL DAPMKKAMDL PRDQGFTNGI AVDSEPKISK ERDVVQLQKT DGQNVRGLDE
301: LKLVKDIEEM KLKVDALESK LKQADSTISK LMEERSISSQ HRQSLQHELA ELRTKKIVKE VHNGFPLLYV CVVAFIAYVI GHFLRT
Arabidopsis Description
PVA22VAP27-2 [Source:UniProtKB/TrEMBL;Acc:A0A178WBB7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.