Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX93534 | Canola | cytosol | 96.52 | 97.3 |
| CDY31124 | Canola | cytosol | 87.43 | 85.83 |
| CDY32136 | Canola | cytosol | 86.63 | 85.26 |
| CDY06330 | Canola | cytosol | 71.66 | 78.13 |
| AT1G08820.3 | Thale cress | cytosol | 79.95 | 77.46 |
| CDY22664 | Canola | plasma membrane | 73.26 | 64.62 |
| VIT_14s0030g00730.t01 | Wine grape | cytosol | 40.91 | 45.54 |
| PGSC0003DMT400057834 | Potato | cytosol | 36.63 | 43.35 |
| GSMUA_Achr8P21990_001 | Banana | cytosol | 34.49 | 42.86 |
| Solyc01g098200.2.1 | Tomato | cytosol | 36.1 | 42.72 |
| CDX91914 | Canola | cytosol | 26.74 | 42.37 |
| CDX74330 | Canola | cytosol | 26.74 | 42.37 |
| GSMUA_Achr10P... | Banana | cytosol | 33.69 | 42.0 |
| CDX83400 | Canola | cytosol, nucleus, plasma membrane | 26.74 | 41.49 |
| CDY37029 | Canola | cytosol, golgi, plasma membrane | 26.47 | 41.42 |
| CDX71796 | Canola | cytosol | 26.2 | 41.18 |
| CDY41153 | Canola | cytosol | 26.2 | 41.18 |
| CDX95631 | Canola | cytosol, golgi, plasma membrane | 26.47 | 41.08 |
| CDY27392 | Canola | cytosol, golgi, plasma membrane | 26.2 | 41.0 |
| CDX89063 | Canola | cytosol, golgi, plasma membrane | 26.2 | 41.0 |
| CDY48365 | Canola | cytosol | 26.2 | 41.0 |
| CDY56247 | Canola | cytosol | 26.2 | 40.83 |
| CDX67837 | Canola | cytosol, golgi, plasma membrane | 25.94 | 40.42 |
| GSMUA_Achr3P08840_001 | Banana | cytosol | 25.67 | 40.0 |
| CDY57247 | Canola | cytosol | 25.67 | 40.0 |
| CDY40565 | Canola | cytosol | 22.46 | 38.53 |
| CDY28969 | Canola | cytosol | 22.46 | 38.53 |
| CDY33519 | Canola | cytosol | 21.93 | 37.61 |
| CDX77746 | Canola | cytosol | 21.93 | 37.61 |
| CDY43438 | Canola | cytosol | 21.66 | 36.82 |
| CDY25982 | Canola | cytosol | 21.39 | 36.36 |
| Os01t0936800-01 | Rice | cytosol, plasma membrane | 33.69 | 33.16 |
| TraesCS3D01G462100.3 | Wheat | cytosol | 32.09 | 33.06 |
| TraesCS3A01G467600.2 | Wheat | cytosol | 32.09 | 33.06 |
| EES04183 | Sorghum | cytosol | 33.16 | 32.89 |
| KRG92793 | Soybean | cytosol | 42.25 | 32.85 |
| TraesCS3B01G511900.2 | Wheat | cytosol | 31.82 | 32.78 |
| Zm00001d011904_P001 | Maize | cytosol | 33.42 | 31.97 |
| Zm00001d042180_P002 | Maize | cytosol | 33.96 | 31.67 |
| HORVU3Hr1G099730.5 | Barley | cytosol | 31.82 | 31.65 |
| CDY44556 | Canola | cytosol, extracellular, plastid | 8.56 | 31.37 |
| KXG21863 | Sorghum | cytosol | 29.68 | 30.66 |
| Zm00001d010495_P002 | Maize | cytosol | 30.75 | 30.26 |
| KRH34006 | Soybean | cytosol | 42.78 | 30.19 |
| Os05t0373000-01 | Rice | cytosol | 31.82 | 24.95 |
Protein Annotations
| Gene3D:2.60.40.10 | MapMan:20.7.1 | GO:A0A078E3E0 | EnsemblPlants:CDX95029 | ProteinID:CDX95029 | ProteinID:CDX95029.1 |
| ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 |
| GO:GO:0005789 | GO:GO:0016020 | EnsemblPlantsGene:GSBRNA2T00100546001 | InterPro:IPR000535 | InterPro:IPR013783 | InterPro:Ig-like_fold |
| InterPro:MSP_dom | PFAM:PF00635 | PFscan:PS50202 | PANTHER:PTHR10809 | PANTHER:PTHR10809:SF45 | InterPro:PapD-like_sf |
| SUPFAM:SSF49354 | TMHMM:TMhelix | UniParc:UPI0004EF1594 | InterPro:VAP | : | : |
Description
BnaC05g06420D
Coordinates
chrLK031886:+:776276..779814
Molecular Weight (calculated)
41970.5 Da
IEP (calculated)
6.872
GRAVY (calculated)
-0.445
Length
374 amino acids
Sequence
(BLAST)
(BLAST)
001: MNMPLLDIQP RTLKFVVDLK KQSTCVVQLT NTTNLFVAFK VKTTSPKKYC VRPNVGVVAP KSSCEFSVIM QAFKEPPPDM VCKDKFLIQS TAVPEETTDE
101: DITASMFSKA EGKHIEENKL RVTLVLPSDS PELSPVKGTL KQEAVFEDSI LKDRVYGQSE TLRLPQYESE IVKEPRMVGH DELKAPYDAK EANDLKATKG
201: GYATSNLEKE AEFDPIKSHK DADDGRGIKS THNLDTPTKM AMDLDQVFPN GKTSANSVTY SDEPKIPRNR DVVHMQQTDA QNIKALEESK LVKDIEGMKL
301: KVNALESKLK QADSTISKLM EERSISFQHR ESLQQELAEL RTKKIVKEVH IGFPLLYVCV VAFISIVIGY CLRT
101: DITASMFSKA EGKHIEENKL RVTLVLPSDS PELSPVKGTL KQEAVFEDSI LKDRVYGQSE TLRLPQYESE IVKEPRMVGH DELKAPYDAK EANDLKATKG
201: GYATSNLEKE AEFDPIKSHK DADDGRGIKS THNLDTPTKM AMDLDQVFPN GKTSANSVTY SDEPKIPRNR DVVHMQQTDA QNIKALEESK LVKDIEGMKL
301: KVNALESKLK QADSTISKLM EERSISFQHR ESLQQELAEL RTKKIVKEVH IGFPLLYVCV VAFISIVIGY CLRT
001: MNMPLLDIQP RTLQFAVDLK KQTSCVVQLT NTTHHYVAFK VKTTSPKKYC VRPNVGVVAP KSTCEFTVIM QAFKEPPPDM VCKDKFLIQS TAVSAETTDE
101: DITASMFSKA EGKHIEENKL RVTLVPPSDS PELSPINTPK QGAVFEDSIL KDRLYSQSET LAPPQYEGEI VKEPRMVGHD ELKAADNAKE LKTPKMATVD
201: FVEDRYTAND LKATKDSYDS SRMAKETGFD PIRSHKDADD GRAIKATTNL DAPMKKAMDL PRDQGFTNGI AVDSEPKISK ERDVVQLQKT DGQNVRGLDE
301: LKLVKDIEEM KLKVDALESK LKQADSTISK LMEERSISSQ HRQSLQHELA ELRTKKIVKE VHNGFPLLYV CVVAFIAYVI GHFLRT
101: DITASMFSKA EGKHIEENKL RVTLVPPSDS PELSPINTPK QGAVFEDSIL KDRLYSQSET LAPPQYEGEI VKEPRMVGHD ELKAADNAKE LKTPKMATVD
201: FVEDRYTAND LKATKDSYDS SRMAKETGFD PIRSHKDADD GRAIKATTNL DAPMKKAMDL PRDQGFTNGI AVDSEPKISK ERDVVQLQKT DGQNVRGLDE
301: LKLVKDIEEM KLKVDALESK LKQADSTISK LMEERSISSQ HRQSLQHELA ELRTKKIVKE VHNGFPLLYV CVVAFIAYVI GHFLRT
Arabidopsis Description
PVA22VAP27-2 [Source:UniProtKB/TrEMBL;Acc:A0A178WBB7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.