CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000978.1-P	Field mustard	cytosol	99.15	99.15
CDX91914	Canola	cytosol	98.31	98.31
AT4G00170.1	Thale cress	cytosol, golgi, peroxisome, plastid	85.59	84.52
VIT_15s0048g00600.t01	Wine grape	cytosol, nucleus, plasma membrane	67.8	66.95
PGSC0003DMT400066797	Potato	cytosol	65.25	64.17
Solyc01g090990.2.1	Tomato	nucleus, plastid, unclear	64.41	63.33
GSMUA_Achr1P20230_001	Banana	cytosol	62.29	62.03
Os02t0661900-02	Rice	cytosol	26.69	59.43
CDY37029	Canola	cytosol, golgi, plasma membrane	58.9	58.16
CDY27392	Canola	cytosol, golgi, plasma membrane	58.9	58.16
GSMUA_Achr1P04220_001	Banana	cytosol, nucleus, plasma membrane	58.47	57.98
CDY56247	Canola	cytosol	58.47	57.5
Zm00001d024588_P001	Maize	cytosol, extracellular, mitochondrion	58.05	56.85
CDY57247	Canola	cytosol	57.63	56.67
CDY41153	Canola	cytosol	56.78	56.3
CDX71796	Canola	cytosol	56.78	56.3
Os08t0155100-01	Rice	plasma membrane	56.36	56.12
KXG24454	Sorghum	cytosol	57.2	56.02
TraesCS7A01G301500.1	Wheat	cytosol, golgi, plasma membrane	56.36	55.88
GSMUA_Achr7P07100_001	Banana	cytosol	56.36	55.88
CDX67837	Canola	cytosol, golgi, plasma membrane	56.78	55.83
CDY48365	Canola	cytosol	56.36	55.65
CDX89063	Canola	cytosol, golgi, plasma membrane	56.36	55.65
CDX83400	Canola	cytosol, nucleus, plasma membrane	56.78	55.6
GSMUA_Achr7P06650_001	Banana	cytosol	50.85	55.56
GSMUA_Achr6P36770_001	Banana	cytosol	49.15	55.5
TraesCS7D01G296900.1	Wheat	cytosol, golgi, plasma membrane	55.93	55.46
TraesCS7B01G201800.1	Wheat	cytosol, golgi, plasma membrane	55.93	55.46
CDX95631	Canola	cytosol, golgi, plasma membrane	55.93	54.77
HORVU0Hr1G021390.2	Barley	cytosol, golgi, plasma membrane	55.08	54.62
GSMUA_Achr1P05960_001	Banana	cytosol, golgi, plasma membrane	53.81	52.92
TraesCS6B01G277000.1	Wheat	cytosol	47.03	47.44
TraesCS6A01G247700.1	Wheat	cytosol	47.03	47.44
HORVU6Hr1G063580.1	Barley	cytosol	47.03	47.44
TraesCS6D01G229800.1	Wheat	cytosol	47.03	47.44
CDY40565	Canola	cytosol	43.64	47.25
CDY28969	Canola	cytosol	43.64	47.25
KXG26858	Sorghum	cytosol, plastid	48.31	46.72
Os04t0554200-02	Rice	cytosol, nucleus, plastid	48.31	46.72
CDY33519	Canola	cytosol	42.37	45.87
CDX77746	Canola	cytosol	42.37	45.87
TraesCS2D01G409200.1	Wheat	cytosol, plastid	47.03	45.87
TraesCS2B01G430600.1	Wheat	cytosol, plastid	46.61	45.45
TraesCS2A01G412000.1	Wheat	cytosol, plastid	46.19	45.04
CDY43438	Canola	cytosol	41.95	45.0
CDY25982	Canola	cytosol	41.53	44.55
HORVU2Hr1G097220.19	Barley	plastid	42.8	40.89
Zm00001d051383_P001	Maize	cytosol, plastid	44.92	40.3
EES07504	Sorghum	plastid	45.34	40.23
CDY44556	Canola	cytosol, extracellular, plastid	15.68	36.27
CDY06330	Canola	cytosol	42.8	29.45
CDX93534	Canola	cytosol	42.8	27.22
CDX95029	Canola	cytosol	42.37	26.74
CDY31124	Canola	cytosol	41.53	25.72
CDY32136	Canola	cytosol	41.1	25.53
CDY22664	Canola	plasma membrane	43.22	24.06

Protein Annotations

Gene3D:2.60.40.10	MapMan:20.7.1	GO:A0A078CBZ4	EnsemblPlants:CDX74330	ProteinID:CDX74330	ProteinID:CDX74330.1
ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0005789	GO:GO:0016020	EnsemblPlantsGene:GSBRNA2T00112128001	InterPro:IPR000535	InterPro:IPR013783	InterPro:Ig-like_fold
InterPro:MSP_dom	PFAM:PF00635	PIRSF:PIRSF019693	PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF43
InterPro:PapD-like_sf	SUPFAM:SSF49354	TMHMM:TMhelix	UniParc:UPI0004EEB7FB	InterPro:VAP	SEG:seg

Description

BnaA03g27170D

Coordinates

chrLK031800:-:2226711..2228381

Molecular Weight (calculated)

26165.4 Da

IEP (calculated)

6.903

GRAVY (calculated)

-0.380

Length

236 amino acids

Sequence
(BLAST)

001: MTTGDLVNIH PTELKFPFEL KKQSSCSLQI SNNTSTQVVA FKVKTTNPRK YCVRPNTGVV LPGDSCNVTV TMQAQKEAPL DMQCKDKFLV QSVIVSDATT
101: SKDVLAEMFN KEPGRMIEDF KLRVVYIPAN PPSPVPEGSE EGNSPRTDFP ASQFDDHVSR TLEETSEKSS EAWSMIHKLT EEKACAVQQS QKLRQELEML
201: RRESSNKQSG GGHSLVLMLL VGLLGCVIGY ILNVRT

Best Arabidopsis Sequence Match ( AT4G00170.1 )
(BLAST)

001: MTTGDLVNIH PTELKFPFEL KKQSSCSMQL TNKTTTQCVA FKVKTTNPRK YCVRPNTGVV LPGDSCNVTV TMQAQKEAPL DMQCKDKFLV QTVVVSDGTT
101: SKEVLAEMFN KEAGRVIEDF KLRVVYIPAN PPSPVPEGSE EGNSPMASLN DIASQSASLF DDVSRTFEET SEKSSEAWSM ISKLTEEKTS ATQQSQKLRL
201: ELEMLRKETS KKQSGGHSLL LMLLVGLLGC VIGYLLNRI

Arabidopsis Description

PVA13Vesicle-associated protein 1-3 [Source:UniProtKB/Swiss-Prot;Acc:Q84WW5]
SUBAcon: [cytosol,golgi,peroxisome,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.