Factsheet for TraesCS2D01G409200.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

mitochondrion 2
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G430600.1	Wheat	cytosol, plastid	96.69	96.69
TraesCS2A01G412000.1	Wheat	cytosol, plastid	96.28	96.28
HORVU2Hr1G097220.19	Barley	plastid	80.17	78.54
Os04t0554200-02	Rice	cytosol, nucleus, plastid	73.14	72.54
KXG26858	Sorghum	cytosol, plastid	69.83	69.26
TraesCS6D01G229800.1	Wheat	cytosol	52.89	54.7
GSMUA_Achr1P04220_001	Banana	cytosol, nucleus, plasma membrane	52.07	52.94
GSMUA_Achr7P07100_001	Banana	cytosol	50.41	51.26
PGSC0003DMT400066797	Potato	cytosol	47.52	47.92
Solyc01g090990.2.1	Tomato	nucleus, plastid, unclear	47.11	47.5
Bra000978.1-P	Field mustard	cytosol	46.28	47.46
CDX91914	Canola	cytosol	46.28	47.46
AT4G00170.1	Thale cress	cytosol, golgi, peroxisome, plastid	46.69	47.28
CDX74330	Canola	cytosol	45.87	47.03
VIT_15s0048g00600.t01	Wine grape	cytosol, nucleus, plasma membrane	45.45	46.03
TraesCS7D01G296900.1	Wheat	cytosol, golgi, plasma membrane	42.56	43.28
TraesCS7D01G296400.1	Wheat	cytosol	41.32	41.15
TraesCS6D01G220300.1	Wheat	cytosol	37.19	39.47
TraesCS2D01G365300.2	Wheat	cytosol	38.84	37.75
TraesCS1D01G163100.1	Wheat	cytosol	38.43	33.94
Solyc08g007390.2.1	Tomato	unclear	25.62	30.85
TraesCS6D01G224100.1	Wheat	cytosol, golgi, plasma membrane	27.27	28.45
TraesCS3D01G462100.3	Wheat	cytosol	35.95	23.97
TraesCS7D01G526500.1	Wheat	cytosol	18.18	9.05
TraesCS3D01G522300.1	Wheat	cytosol	14.46	7.63
TraesCS4D01G348900.1	Wheat	cytosol, nucleus, plastid	16.94	4.15
TraesCS7D01G002600.1	Wheat	cytosol	20.25	3.36
TraesCS7D01G013200.1	Wheat	cytosol	19.01	3.21
TraesCS7D01G526400.1	Wheat	cytosol	4.55	2.94
TraesCS7D01G006600.1	Wheat	cytosol	1.65	1.63
TraesCS3D01G542400.1	Wheat	cytosol	0.83	0.77

Protein Annotations

Gene3D:2.60.40.10	MapMan:20.7.1	ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	InterPro:IPR000535	InterPro:IPR013783
InterPro:Ig-like_fold	InterPro:MSP_dom	PFAM:PF00635	PIRSF:PIRSF019693	PFscan:PS50202	PANTHER:PTHR10809
PANTHER:PTHR10809:SF54	InterPro:PapD-like_sf	SUPFAM:SSF49354	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS2D01G409200	EnsemblPlants:TraesCS2D01G409200.1
InterPro:VAP	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2D:-:524045567..524050355

Molecular Weight (calculated)

27018.9 Da

IEP (calculated)

9.113

GRAVY (calculated)

-0.275

Length

242 amino acids

Sequence
(BLAST)

001: MSSTLLRVCP SELKIPYEVK RQRSCCMQLI NKTDKYVAFK VKTTNPRKYS VRHTCGILLP RSSCSVTVTM QAPRDMQLDH HCKDKFLVQS AVARDGATMR
101: DLVPELFTRA PGRLIEEFKL RVVYIAANPP SPVPEEAEEE DASPRSEVTM GYEAKVSSAF DAASRCMDNS GAKPSCTKGA SVVPTLVGEK VSTREENQKR
201: LQQNMELLRE AGSPQQGFSV MFVLLVFMSS VFIGHLMKHI KV

Best Arabidopsis Sequence Match ( AT2G45140.1 )
(BLAST)

001: MSNELLTIDP VDLQFPFELK KQISCSLYLG NKTDNYVAFK VKTTNPKKYC VRPNTGVVHP RSSSEVLVTM QAQKEAPADL QCKDKFLLQC VVASPGATPK
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL VTKLTEEKNS AVQLNNRLQQ
201: ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT

Arabidopsis Description

PVA12Vesicle-associated protein 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHC8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.