Subcellular Localization
min:
: max
Winner_takes_all: cytosol, plastid
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 2
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G412000.1 | Wheat | cytosol, plastid | 97.11 | 97.11 |
| TraesCS2D01G409200.1 | Wheat | cytosol, plastid | 96.69 | 96.69 |
| HORVU2Hr1G097220.19 | Barley | plastid | 81.41 | 79.76 |
| Os04t0554200-02 | Rice | cytosol, nucleus, plastid | 73.14 | 72.54 |
| KXG26858 | Sorghum | cytosol, plastid | 70.25 | 69.67 |
| TraesCS6B01G277000.1 | Wheat | cytosol | 52.48 | 54.27 |
| GSMUA_Achr1P04220_001 | Banana | cytosol, nucleus, plasma membrane | 51.65 | 52.52 |
| GSMUA_Achr7P07100_001 | Banana | cytosol | 50.83 | 51.68 |
| PGSC0003DMT400066797 | Potato | cytosol | 47.52 | 47.92 |
| Solyc01g090990.2.1 | Tomato | nucleus, plastid, unclear | 47.11 | 47.5 |
| Bra000978.1-P | Field mustard | cytosol | 45.87 | 47.03 |
| CDX91914 | Canola | cytosol | 45.87 | 47.03 |
| AT4G00170.1 | Thale cress | cytosol, golgi, peroxisome, plastid | 46.28 | 46.86 |
| CDX74330 | Canola | cytosol | 45.45 | 46.61 |
| VIT_15s0048g00600.t01 | Wine grape | cytosol, nucleus, plasma membrane | 44.63 | 45.19 |
| TraesCS7B01G201800.1 | Wheat | cytosol, golgi, plasma membrane | 42.15 | 42.86 |
| TraesCS6B01G266100.1 | Wheat | cytosol, golgi, plasma membrane | 36.36 | 38.6 |
| TraesCS2B01G385700.2 | Wheat | cytosol | 39.67 | 38.55 |
| TraesCS1B01G204400.1 | Wheat | cytosol | 36.78 | 32.48 |
| Solyc08g007390.2.1 | Tomato | unclear | 25.62 | 30.85 |
| TraesCS2B01G036500.1 | Wheat | cytosol | 17.77 | 28.86 |
| TraesCS6B01G282300.1 | Wheat | cytosol, golgi, plasma membrane | 27.27 | 28.45 |
| TraesCS3B01G511900.2 | Wheat | cytosol | 35.54 | 23.69 |
| TraesCS6B01G008300.1 | Wheat | cytosol | 19.01 | 17.62 |
| TraesCS2B01G214400.1 | Wheat | mitochondrion | 17.77 | 16.04 |
| TraesCS7B01G459800.1 | Wheat | cytosol | 18.18 | 8.56 |
| TraesCS6B01G001300.1 | Wheat | cytosol, nucleus, plasma membrane | 15.7 | 8.1 |
| TraesCS7B01G460100.2 | Wheat | cytosol | 16.12 | 7.99 |
| TraesCS7B01G002600.1 | Wheat | cytosol | 14.46 | 7.85 |
| TraesCS3B01G103500.2 | Wheat | cytosol | 17.77 | 7.73 |
| TraesCS2B01G100300.1 | Wheat | cytosol | 14.46 | 7.48 |
| TraesCS7B01G462400.1 | Wheat | cytosol | 18.59 | 7.35 |
| TraesCS7B01G460400.1 | Wheat | cytosol | 23.97 | 7.26 |
| TraesCS4B01G372400.1 | Wheat | cytosol | 15.7 | 7.13 |
| TraesCS7B01G461000.2 | Wheat | cytosol | 22.73 | 6.46 |
| TraesCS3B01G611100.1 | Wheat | cytosol | 19.83 | 6.23 |
| TraesCS7B01G462600.1 | Wheat | cytosol | 21.49 | 6.03 |
| TraesCS7B01G463000.1 | Wheat | mitochondrion | 25.21 | 6.01 |
| TraesCS7B01G459900.1 | Wheat | cytosol | 21.07 | 5.91 |
| TraesCS2B01G025500.1 | Wheat | cytosol | 19.83 | 4.93 |
| TraesCS7B01G460600.1 | Wheat | cytosol | 13.64 | 4.8 |
| TraesCS3B01G593500.1 | Wheat | cytosol | 21.07 | 3.58 |
| TraesCS4B01G343200.1 | Wheat | cytosol | 19.01 | 3.26 |
| TraesCS6B01G008400.1 | Wheat | cytosol | 19.01 | 3.01 |
| TraesCS7B01G353800.1 | Wheat | cytosol | 17.77 | 2.51 |
| TraesCS4B01G004000.1 | Wheat | cytosol, peroxisome, plasma membrane | 20.25 | 2.07 |
| TraesCS3B01G574400.1 | Wheat | cytosol | 0.83 | 0.75 |
| TraesCS6B01G013900.1 | Wheat | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:2.60.40.10 | MapMan:20.7.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | InterPro:IPR000535 | InterPro:IPR013783 | InterPro:Ig-like_fold |
| InterPro:MSP_dom | PFAM:PF00635 | PIRSF:PIRSF019693 | PFscan:PS50202 | PANTHER:PTHR10809 | PANTHER:PTHR10809:SF54 |
| InterPro:PapD-like_sf | SUPFAM:SSF49354 | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS2B01G430600 | EnsemblPlants:TraesCS2B01G430600.1 | InterPro:VAP |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr2B:-:619391810..619396795
Molecular Weight (calculated)
26984.9 Da
IEP (calculated)
9.279
GRAVY (calculated)
-0.226
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSTLLRVCP SELKIPYEVK RQRSCCMQLI NKTDKYVAFK VKTTNPRKYS VRHTCGILLP RSSCSVTVTM QAPRDMQLDH HCKDKFLVQS AVARDGATMR
101: DLVPELFTRA PGRLIEEFKL RVVYIAANPP SPVPEEAEEE DASPRSEAMM GYEAKVSSAF GAASRCVDNS GAKLSCTKGA SVVSTLVGEK VYTREENQKK
201: LQQNMELLRE AGSPQQGFSV MFVLLVFMSS VFIGHLMKHI KV
101: DLVPELFTRA PGRLIEEFKL RVVYIAANPP SPVPEEAEEE DASPRSEAMM GYEAKVSSAF GAASRCVDNS GAKLSCTKGA SVVSTLVGEK VYTREENQKK
201: LQQNMELLRE AGSPQQGFSV MFVLLVFMSS VFIGHLMKHI KV
001: MSNELLTIDP VDLQFPFELK KQISCSLYLG NKTDNYVAFK VKTTNPKKYC VRPNTGVVHP RSSSEVLVTM QAQKEAPADL QCKDKFLLQC VVASPGATPK
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL VTKLTEEKNS AVQLNNRLQQ
201: ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL VTKLTEEKNS AVQLNNRLQQ
201: ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT
Arabidopsis Description
PVA12Vesicle-associated protein 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHC8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.