Factsheet for PGSC0003DMT400042613

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol, plasma membrane

Predictor Summary:

nucleus 1
vacuole 3
cytosol 1
extracellular 2
golgi 1
plasma membrane 2
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	vacuole
MultiLoc:	cytosol
Plant-mPloc:	vacuole
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400068047	Potato	cytosol, extracellular, plastid, vacuole	90.76	91.13
Solyc06g066560.1.1	Tomato	mitochondrion	95.18	86.81
KRH44312	Soybean	extracellular	84.74	85.08
KRH47241	Soybean	mitochondrion	84.74	85.08
GSMUA_Achr6P05830_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	81.53	82.86
GSMUA_Achr9P28940_001	Banana	plasma membrane	81.53	82.86
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, plastid, vacuole	79.52	81.48
Os06t0336200-01	Rice	nucleus	80.32	80.65
PGSC0003DMT400030994	Potato	endoplasmic reticulum, plasma membrane, vacuole	79.52	79.2
PGSC0003DMT400006558	Potato	endoplasmic reticulum, plasma membrane	79.12	79.12
EER89797	Sorghum	plasma membrane	78.71	79.03
HORVU7Hr1G081770.8	Barley	plasma membrane	78.31	78.31
TraesCS7B01G243000.1	Wheat	plasma membrane	77.91	78.23
TraesCS7A01G331300.1	Wheat	unclear	77.11	77.42
VIT_09s0002g04020.t01	Wine grape	plasma membrane, vacuole	76.31	76.31
TraesCS7D01G339600.1	Wheat	plasma membrane	76.71	68.46
PGSC0003DMT400072432	Potato	cytosol	63.45	63.71
PGSC0003DMT400018375	Potato	cytosol	59.44	59.2
PGSC0003DMT400077927	Potato	cytosol, plasma membrane, plastid, vacuole	57.83	56.92
PGSC0003DMT400024847	Potato	extracellular, plasma membrane, vacuole	50.2	50.61
PGSC0003DMT400069330	Potato	cytosol	51.81	49.81
PGSC0003DMT400039507	Potato	cytosol, golgi, plasma membrane	51.0	48.85
PGSC0003DMT400038394	Potato	plastid	47.39	47.01
PGSC0003DMT400053882	Potato	extracellular	32.93	41.84
PGSC0003DMT400009240	Potato	cytosol, extracellular, plasma membrane	36.14	35.86
PGSC0003DMT400027154	Potato	plasma membrane	40.16	35.59
PGSC0003DMT400053877	Potato	plasma membrane	39.76	35.48
PGSC0003DMT400020870	Potato	plasma membrane	39.36	34.15
PGSC0003DMT400062174	Potato	plasma membrane	38.96	33.92
PGSC0003DMT400068708	Potato	plasma membrane	37.75	33.22
PGSC0003DMT400015824	Potato	plasma membrane	37.35	32.86
PGSC0003DMT400000151	Potato	cytosol, peroxisome, plasma membrane	36.55	31.93
PGSC0003DMT400053881	Potato	plasma membrane	39.36	31.92
PGSC0003DMT400053479	Potato	plasma membrane	35.74	31.12
PGSC0003DMT400014809	Potato	peroxisome	34.94	30.31
PGSC0003DMT400012780	Potato	cytosol, peroxisome, plasma membrane	34.54	29.86
PGSC0003DMT400032134	Potato	cytosol, peroxisome, plasma membrane	34.14	29.72
PGSC0003DMT400060322	Potato	mitochondrion	31.73	28.73
PGSC0003DMT400064008	Potato	extracellular	11.65	25.89

Protein Annotations

Gene3D:1.20.1080.10	EntrezGene:102603645	MapMan:24.3.1.3	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015267	GO:GO:0016020
GO:GO:0016021	GO:GO:0055085	InterPro:IPR023271	UniProt:M1BDC5	InterPro:MIP	InterPro:MIP_CS
PFAM:PF00230	EnsemblPlantsGene:PGSC0003DMG400016528	PGSC:PGSC0003DMG400016528	EnsemblPlants:PGSC0003DMT400042613	PRINTS:PR00783	ScanProsite:PS00221
PANTHER:PTHR19139	PANTHER:PTHR19139:SF257	SUPFAM:SSF81338	TIGRFAMs:TIGR00861	TMHMM:TMhelix	UniParc:UPI0002953156
RefSeq:XP_006356145.1	SEG:seg	:	:	:	:

Description

Tonoplast intrinsic protein [Source:PGSC_GENE;Acc:PGSC0003DMG400016528]

Coordinates

chr6:-:49224493..49225780

Molecular Weight (calculated)

25090.7 Da

IEP (calculated)

6.060

GRAVY (calculated)

0.959

Length

249 amino acids

Sequence
(BLAST)

001: MPCIAFGRFD DSFSGGSIKA YVAEFISTLL FVFAGVGSAI AYNKLTADAA LDPAGLVAVA VCHGFALFVA VSIGANISGG HVNPAVTFGL ALGGQITLLT
101: GLFYWVAQLL GAIVACCLLK FVTGGLAVPI HGVAAGVGAT EGVVMEIIIT FALVYTVYAT AADPKKGSLG TIAPIAIGFI VGANILAAGP FSGGSMNPAR
201: SFGPAVASGN FAGNWIYWVG PLIGGGLAGL IYSNVFMNYG DHVPLSSDF

Best Arabidopsis Sequence Match ( AT3G16240.1 )
(BLAST)

001: MAGVAFGSFD DSFSLASLRA YLAEFISTLL FVFAGVGSAI AYAKLTSDAA LDTPGLVAIA VCHGFALFVA VAIGANISGG HVNPAVTFGL AVGGQITVIT
101: GVFYWIAQLL GSTAACFLLK YVTGGLAVPT HSVAAGLGSI EGVVMEIIIT FALVYTVYAT AADPKKGSLG TIAPLAIGLI VGANILAAGP FSGGSMNPAR
201: SFGPAVAAGD FSGHWVYWVG PLIGGGLAGL IYGNVFMGSS EHVPLASADF

Arabidopsis Description

TIP2-1Aquaporin TIP2-1 [Source:UniProtKB/Swiss-Prot;Acc:Q41951]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.