Factsheet for Os09t0529350-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
extracellular 6
plastid 1
endoplasmic reticulum 3
vacuole 4
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	extracellular
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

plastid: 21433289

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0666200-01
Os04t0559700-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24090.1	Os02t0666200-01	AT1G01620.1	21798944
AT4G24090.1	Os04t0559700-01	AT1G01620.1	21798944
AT4G24090.1	Os02t0666200-01	AT3G61430.1	21798944
AT4G24090.1	Os04t0559700-01	AT3G61430.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010435_P001	Maize	mitochondrion	5.56	91.67
Zm00001d044473_P001	Maize	mitochondrion	5.56	91.67
Zm00001d052497_P001	Maize	extracellular, plasma membrane, vacuole	45.45	58.06
TraesCS5B01G316800.1	Wheat	mitochondrion, plastid	73.74	49.32
EER97075	Sorghum	golgi, mitochondrion, plastid	75.76	48.86
Zm00001d021242_P001	Maize	plastid	75.76	48.7
TraesCS5A01G316300.1	Wheat	mitochondrion, plastid	72.73	48.65
TraesCS5D01G322500.1	Wheat	mitochondrion, plastid	72.22	48.31
PGSC0003DMT400031912	Potato	cytosol	49.49	37.84
GSMUA_Achr9P00850_001	Banana	plastid	54.55	34.73
Solyc08g083010.2.1	Tomato	plastid	50.51	32.15
AT4G24090.1	Thale cress	plastid	48.48	31.17
VIT_02s0025g02450.t01	Wine grape	plastid	49.49	31.11
KRH40927	Soybean	plastid	45.45	30.72
Bra013761.1-P	Field mustard	plastid	47.98	30.25

Protein Annotations

EnsemblPlants:Os09t0529350-01	EnsemblPlantsGene:Os09g0529350	EntrezGene:107277799	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
ncoils:Coil	PANTHER:PTHR36383	ProteinID:BAT09081.1	RefSeq:XP_015612192.1	SEG:seg	SignalP:SignalP-noTM
TMHMM:TMhelix	UniParc:UPI0003938C21	UniProt:A0A0P0XQV0	MapMan:35.2	:	:

Description

Hypothetical conserved gene. (Os09t0529350-01)

Coordinates

chr9:-:20737101..20739478

Molecular Weight (calculated)

21969.6 Da

IEP (calculated)

4.492

GRAVY (calculated)

0.373

Length

198 amino acids

Sequence
(BLAST)

001: MCYFLLIMLF TMLHYINKIT ESQRELLQAR EMIDEAQRSL SSSLEDQSFG DVPSGDIDED SERLESVKAA AVSSVVGVLA SLPISFYEAH DFPQLFVQLS
101: VIFISCALFG VTFRYAIRRD LDNVQLKTGA AAAFAFVRGL AMVESGRPFE LSTDALISLA LDGAVSVVEN ILTFLPAAIA LDYCFKMRFL SPFPTRKQ

Best Arabidopsis Sequence Match ( AT4G24090.1 )
(BLAST)

001: MQSLSLQSLP WKPNSVTLPE INLLNPKQLT ASSSQYRRTR NWRIRSSSED NVAISSDGGD LKNSLSGIVG NQVEELLSRE ENKGLLDGLE KASLRVEIAK
101: RELEDIERQE IEAKLLQDYI NQLESRAAEI AECQQEIDAA RSMVEEAERS LSLADNSTIG SSEKGYSIDK DKERLESAKA AVIAAAVGTI AELPFALSQV
201: ASMEQLVLPL GIAFASCALF GVTFRYAVRR DLDDNHLKSG AVAAFGFVKG LGMLSRGPPL ELSWESLFSH GIDGAVLVSQ SVLIFAFASI GLDFCFKMKL
301: LRPFPSSD

Arabidopsis Description

At4g24090 [Source:UniProtKB/TrEMBL;Acc:Q5XEV6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.