Factsheet for Bra013761.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
nucleus 1
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra007603.1-P
Bra014437.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24090.1	Bra007603.1-P	AT3G61430.1	21798944
AT4G24090.1	Bra014437.1-P	AT3G61430.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G24090.1	Thale cress	plastid	79.3	80.84
PGSC0003DMT400031912	Potato	cytosol	46.5	56.37
Solyc08g083010.2.1	Tomato	plastid	49.68	50.16
VIT_02s0025g02450.t01	Wine grape	plastid	49.04	48.89
KRH40927	Soybean	plastid	45.54	48.81
Os09t0529350-01	Rice	plastid	30.25	47.98
TraesCS5B01G316800.1	Wheat	mitochondrion, plastid	40.76	43.24
EER97075	Sorghum	golgi, mitochondrion, plastid	41.72	42.67
TraesCS5D01G322500.1	Wheat	mitochondrion, plastid	40.13	42.57
TraesCS5A01G316300.1	Wheat	mitochondrion, plastid	39.81	42.23
GSMUA_Achr9P00850_001	Banana	plastid	41.72	42.12
Zm00001d010435_P001	Maize	mitochondrion	1.59	41.67
Zm00001d044473_P001	Maize	mitochondrion	1.59	41.67
Zm00001d021242_P001	Maize	plastid	40.45	41.23
Zm00001d052497_P001	Maize	extracellular, plasma membrane, vacuole	20.06	40.65

Protein Annotations

EnsemblPlants:Bra013761.1	EnsemblPlants:Bra013761.1-P	EnsemblPlantsGene:Bra013761	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
ncoils:Coil	PANTHER:PTHR36383	SEG:seg	TMHMM:TMhelix	UniParc:UPI00025460AD	UniProt:M4DBA1
MapMan:35.2	:	:	:	:	:

Description

AT4G24090 (E=1e-124) | unknown protein

Coordinates

chrA01:+:7640472..7642006

Molecular Weight (calculated)

34238.7 Da

IEP (calculated)

4.912

GRAVY (calculated)

-0.103

Length

314 amino acids

Sequence
(BLAST)

001: MQTLSPQSLR WKSNPLIVSE SYVLNPKALN FQLSSLSSPH RRTRNWRISS SSEDNAANSS DGGDLKKSLS GIVGNQVEEL LSREENKSLL DGLEKASMRV
101: ETAKRELAEI ERQEFEAKLL QDYVDKLESR AAEIAECQQE IIAARTMVEE AERSLSLAET PATESSENGY SIDKDKERLE SAKAAAIAAA VGTVAEVPFA
201: LSQVSSIEQL VLPLGVAFAS CALFGVTFRY VIRRDLDDSH LKSGAVAAFG FVKGLGMLSR GPPLELSWES LFSHGIDGAV LVSQSVLIFA FASISLDFCF
301: KLKLLKPFPS SAQM

Best Arabidopsis Sequence Match ( AT4G24090.1 )
(BLAST)

001: MQSLSLQSLP WKPNSVTLPE INLLNPKQLT ASSSQYRRTR NWRIRSSSED NVAISSDGGD LKNSLSGIVG NQVEELLSRE ENKGLLDGLE KASLRVEIAK
101: RELEDIERQE IEAKLLQDYI NQLESRAAEI AECQQEIDAA RSMVEEAERS LSLADNSTIG SSEKGYSIDK DKERLESAKA AVIAAAVGTI AELPFALSQV
201: ASMEQLVLPL GIAFASCALF GVTFRYAVRR DLDDNHLKSG AVAAFGFVKG LGMLSRGPPL ELSWESLFSH GIDGAVLVSQ SVLIFAFASI GLDFCFKMKL
301: LRPFPSSD

Arabidopsis Description

At4g24090 [Source:UniProtKB/TrEMBL;Acc:Q5XEV6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.