Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr5P12400_001 | |
| GSMUA_Achr8P11540_001 | |
| GSMUA_AchrUn_... | |
| GSMUA_AchrUn_... |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d010435_P001 | Maize | mitochondrion | 2.57 | 66.67 |
| Zm00001d044473_P001 | Maize | mitochondrion | 2.57 | 66.67 |
| Os09t0529350-01 | Rice | plastid | 34.73 | 54.55 |
| PGSC0003DMT400031912 | Potato | cytosol | 43.09 | 51.74 |
| TraesCS5B01G316800.1 | Wheat | mitochondrion, plastid | 46.62 | 48.99 |
| TraesCS5A01G316300.1 | Wheat | mitochondrion, plastid | 45.98 | 48.31 |
| TraesCS5D01G322500.1 | Wheat | mitochondrion, plastid | 45.98 | 48.31 |
| VIT_02s0025g02450.t01 | Wine grape | plastid | 48.55 | 47.94 |
| EER97075 | Sorghum | golgi, mitochondrion, plastid | 47.27 | 47.88 |
| Zm00001d021242_P001 | Maize | plastid | 46.95 | 47.4 |
| Zm00001d052497_P001 | Maize | extracellular, plasma membrane, vacuole | 22.19 | 44.52 |
| Solyc08g083010.2.1 | Tomato | plastid | 44.37 | 44.37 |
| AT4G24090.1 | Thale cress | plastid | 43.73 | 44.16 |
| KRH40927 | Soybean | plastid | 40.19 | 42.66 |
| Bra013761.1-P | Field mustard | plastid | 42.12 | 41.72 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr9P00850_001 | EnsemblPlants:GSMUA_Achr9T00850_001 | EnsemblPlantsGene:GSMUA_Achr9G00850_001 | ncoils:Coil | PANTHER:PTHR36383 | SEG:seg |
| UniParc:UPI000295C017 | UniProt:M0TWE2 | MapMan:35.2 | : | : | : |
Description
Putative uncharacterized protein [Source:GMGC_GENE;Acc:GSMUA_Achr9G00850_001]
Coordinates
chr9:-:627284..630702
Molecular Weight (calculated)
34247.9 Da
IEP (calculated)
6.309
GRAVY (calculated)
-0.151
Length
311 amino acids
Sequence
(BLAST)
(BLAST)
001: MPPPASAIPQ FRCVSSSLLR SRKLISSDPH HIHCPKPISS LNLLSSSSSP PRRWRCGANS EGTGSRPEEE ALSGMVDELL RREENKALLD GLEEASARVE
101: RAREALADIE RRAADVLRAK EYMRQLQNRE AEIAQSQREL LEARAKVEEA QRSLSANTDD SNNSDIVFED INKEKERLES AKAAVVSSVV GTLASVPIYL
201: YQATSVPQVI LDLAVISISC ALFGVTFRYT VRQDLDNLQL KTGTCAAFGL IKGLSAAETG RILKLDAETF ISFSIDGAVY VSENIFIFLA AAVALDFCFK
301: MRLLSPFPTR R
101: RAREALADIE RRAADVLRAK EYMRQLQNRE AEIAQSQREL LEARAKVEEA QRSLSANTDD SNNSDIVFED INKEKERLES AKAAVVSSVV GTLASVPIYL
201: YQATSVPQVI LDLAVISISC ALFGVTFRYT VRQDLDNLQL KTGTCAAFGL IKGLSAAETG RILKLDAETF ISFSIDGAVY VSENIFIFLA AAVALDFCFK
301: MRLLSPFPTR R
001: MQSLSLQSLP WKPNSVTLPE INLLNPKQLT ASSSQYRRTR NWRIRSSSED NVAISSDGGD LKNSLSGIVG NQVEELLSRE ENKGLLDGLE KASLRVEIAK
101: RELEDIERQE IEAKLLQDYI NQLESRAAEI AECQQEIDAA RSMVEEAERS LSLADNSTIG SSEKGYSIDK DKERLESAKA AVIAAAVGTI AELPFALSQV
201: ASMEQLVLPL GIAFASCALF GVTFRYAVRR DLDDNHLKSG AVAAFGFVKG LGMLSRGPPL ELSWESLFSH GIDGAVLVSQ SVLIFAFASI GLDFCFKMKL
301: LRPFPSSD
101: RELEDIERQE IEAKLLQDYI NQLESRAAEI AECQQEIDAA RSMVEEAERS LSLADNSTIG SSEKGYSIDK DKERLESAKA AVIAAAVGTI AELPFALSQV
201: ASMEQLVLPL GIAFASCALF GVTFRYAVRR DLDDNHLKSG AVAAFGFVKG LGMLSRGPPL ELSWESLFSH GIDGAVLVSQ SVLIFAFASI GLDFCFKMKL
301: LRPFPSSD
Arabidopsis Description
At4g24090 [Source:UniProtKB/TrEMBL;Acc:Q5XEV6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.