Factsheet for VIT_02s0025g02450.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_13s0067g00220.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24090.1	VIT_13s0067g00220.t01	AT1G01620.1	21798944
AT4G24090.1	VIT_13s0067g00220.t01	AT3G61430.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400031912	Potato	cytosol	55.56	67.57
Zm00001d010435_P001	Maize	mitochondrion	2.54	66.67
Zm00001d044473_P001	Maize	mitochondrion	2.54	66.67
KRH40927	Soybean	plastid	53.65	57.68
Solyc08g083010.2.1	Tomato	plastid	55.56	56.27
AT4G24090.1	Thale cress	plastid	48.57	49.68
Os09t0529350-01	Rice	plastid	31.11	49.49
Bra013761.1-P	Field mustard	plastid	48.89	49.04
GSMUA_Achr9P00850_001	Banana	plastid	47.94	48.55
EER97075	Sorghum	golgi, mitochondrion, plastid	44.76	45.93
TraesCS5B01G316800.1	Wheat	mitochondrion, plastid	42.22	44.93
Zm00001d021242_P001	Maize	plastid	43.81	44.81
TraesCS5A01G316300.1	Wheat	mitochondrion, plastid	41.9	44.59
TraesCS5D01G322500.1	Wheat	mitochondrion, plastid	41.59	44.26
Zm00001d052497_P001	Maize	extracellular, plasma membrane, vacuole	21.27	43.23

Protein Annotations

EntrezGene:100244479	wikigene:100244479	MapMan:35.2	UniProt:A5CBE3	EMBL:AM488984	ProteinID:CAN62286
ProteinID:CAN62286.1	ProteinID:CBI34575	ProteinID:CBI34575.3	ncoils:Coil	EMBL:FN596251	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	EntrezGene:LOC100244479	wikigene:LOC100244479	PANTHER:PTHR36383	TMHMM:TMhelix
UniParc:UPI00015228E7	ArrayExpress:VIT_02s0025g02450	EnsemblPlantsGene:VIT_02s0025g02450	EnsemblPlants:VIT_02s0025g02450.t01	unigene:Vvi.17098	RefSeq:XP_002280809
RefSeq:XP_002280809.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2:+:2138692..2140549

Molecular Weight (calculated)

34645.5 Da

IEP (calculated)

5.182

GRAVY (calculated)

-0.045

Length

315 amino acids

Sequence
(BLAST)

001: MAATINSSVL SCRSPRSIPT NIFCVAYPTC TKAFNRASAV SRAVFVKCSS EESENGGFKE ALSGMVGKQV EELLNREENR VLLEGLEKAS QRVEKARREL
101: AEIEKQEIEA KQLRNYIEQL EGRSSEIAEC QREILEARAK VEEAERSLSI NMGEDGDRAS FLETESKEIN KEEERLESVK AALVSAIVGT FAGLPIFLTQ
201: VTSSSQLLLP LAINFVSCAL FGITFRYTIR RDLDNIQLKT GTSAAFGFVK GLATLGGGSP LELDAGSFLS HAFDGVLYVS ENLFIFVFAA VGLDFCFKMR
301: FLSPFPIKSS VSRTK

Best Arabidopsis Sequence Match ( AT4G24090.1 )
(BLAST)

001: MQSLSLQSLP WKPNSVTLPE INLLNPKQLT ASSSQYRRTR NWRIRSSSED NVAISSDGGD LKNSLSGIVG NQVEELLSRE ENKGLLDGLE KASLRVEIAK
101: RELEDIERQE IEAKLLQDYI NQLESRAAEI AECQQEIDAA RSMVEEAERS LSLADNSTIG SSEKGYSIDK DKERLESAKA AVIAAAVGTI AELPFALSQV
201: ASMEQLVLPL GIAFASCALF GVTFRYAVRR DLDDNHLKSG AVAAFGFVKG LGMLSRGPPL ELSWESLFSH GIDGAVLVSQ SVLIFAFASI GLDFCFKMKL
301: LRPFPSSD

Arabidopsis Description

At4g24090 [Source:UniProtKB/TrEMBL;Acc:Q5XEV6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.