Factsheet for PGSC0003DMT400031912

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000151
PGSC0003DMT400012780
PGSC0003DMT400014809
PGSC0003DMT400032134
PGSC0003DMT400053479

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24090.1	PGSC0003DMT400000151	AT1G01620.1	21798944
AT4G24090.1	PGSC0003DMT400012780	AT1G01620.1	21798944
AT4G24090.1	PGSC0003DMT400014809	AT1G01620.1	21798944
AT4G24090.1	PGSC0003DMT400032134	AT1G01620.1	21798944
AT4G24090.1	PGSC0003DMT400053479	AT1G01620.1	21798944
AT4G24090.1	PGSC0003DMT400000151	AT3G61430.1	21798944
AT4G24090.1	PGSC0003DMT400012780	AT3G61430.1	21798944
AT4G24090.1	PGSC0003DMT400014809	AT3G61430.1	21798944
AT4G24090.1	PGSC0003DMT400032134	AT3G61430.1	21798944
AT4G24090.1	PGSC0003DMT400053479	AT3G61430.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g083010.2.1	Tomato	plastid	97.68	81.35
VIT_02s0025g02450.t01	Wine grape	plastid	67.57	55.56
KRH40927	Soybean	plastid	59.46	52.56
Zm00001d010435_P001	Maize	mitochondrion	2.32	50.0
Zm00001d044473_P001	Maize	mitochondrion	2.32	50.0
Os09t0529350-01	Rice	plastid	37.84	49.49
AT4G24090.1	Thale cress	plastid	58.3	49.03
Bra013761.1-P	Field mustard	plastid	56.37	46.5
Zm00001d052497_P001	Maize	extracellular, plasma membrane, vacuole	26.25	43.87
EER97075	Sorghum	golgi, mitochondrion, plastid	51.74	43.65
TraesCS5A01G316300.1	Wheat	mitochondrion, plastid	49.81	43.58
TraesCS5B01G316800.1	Wheat	mitochondrion, plastid	49.81	43.58
GSMUA_Achr9P00850_001	Banana	plastid	51.74	43.09
TraesCS5D01G322500.1	Wheat	mitochondrion, plastid	49.03	42.91
Zm00001d021242_P001	Maize	plastid	50.97	42.86

Protein Annotations

EnsemblPlants:PGSC0003DMT400031912	EnsemblPlantsGene:PGSC0003DMG400012243	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	ncoils:Coil
PANTHER:PTHR36383	PGSC:PGSC0003DMG400012243	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002955698	UniProt:M1AWH0
MapMan:35.2	:	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400012243]

Coordinates

chr8:+:56550798..56555911

Molecular Weight (calculated)

28494.3 Da

IEP (calculated)

4.550

GRAVY (calculated)

0.025

Length

259 amino acids

Sequence
(BLAST)

001: MGNLKDALTG IVDERVEELL KREENRVLLD GLEKATLRVE MAKKELAEIE RQELEAKLLK DYITQLETRT SEIAECQKDI LEARAMIEEA ERSLNVSGDA
101: RRRDATDGDV VNRDEERVES IKAASLSAIV GTLAGLPIFL SRITSSSELI LPLSITFISC ALFGVTFRYA VRRDLDNFQL KSGTSAAFGV VKGLATLGGG
201: PPLELDAASF WSHALDGAVY VSENLLIFLF AGVGLDLCFK LRILSPFPID RSISETDKI

Best Arabidopsis Sequence Match ( AT4G24090.1 )
(BLAST)

001: MQSLSLQSLP WKPNSVTLPE INLLNPKQLT ASSSQYRRTR NWRIRSSSED NVAISSDGGD LKNSLSGIVG NQVEELLSRE ENKGLLDGLE KASLRVEIAK
101: RELEDIERQE IEAKLLQDYI NQLESRAAEI AECQQEIDAA RSMVEEAERS LSLADNSTIG SSEKGYSIDK DKERLESAKA AVIAAAVGTI AELPFALSQV
201: ASMEQLVLPL GIAFASCALF GVTFRYAVRR DLDDNHLKSG AVAAFGFVKG LGMLSRGPPL ELSWESLFSH GIDGAVLVSQ SVLIFAFASI GLDFCFKMKL
301: LRPFPSSD

Arabidopsis Description

At4g24090 [Source:UniProtKB/TrEMBL;Acc:Q5XEV6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.