Factsheet for Os10t0507600-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plasma membrane

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G163100.1	Wheat	cytosol	76.25	66.79
TraesCS1B01G204400.1	Wheat	cytosol	75.0	65.69
EER91402	Sorghum	cytosol	73.75	65.07
Zm00001d032507_P001	Maize	cytosol, golgi, plasma membrane	71.25	63.1
Os02t0661900-02	Rice	cytosol	22.92	51.89
Os08t0156700-01	Rice	plasma membrane	43.75	43.21
Os04t0534400-01	Rice	cytosol	44.17	42.4
Os02t0643000-01	Rice	plasma membrane	44.17	40.93
Os08t0155100-01	Rice	plasma membrane	38.33	38.82
Os04t0369000-01	Rice	cytosol, plasma membrane	20.0	35.04
Os10t0549100-01	Rice	plasma membrane	31.25	32.19
Os04t0554200-02	Rice	cytosol, nucleus, plastid	30.42	29.92
Os02t0652550-00	Rice	cytosol	30.83	27.72
Os01t0936800-01	Rice	cytosol, plasma membrane	36.25	22.89
Os05t0373000-01	Rice	cytosol	36.25	18.24
TraesCSU01G255000.1	Wheat	cytosol	0.0	0.0

Protein Annotations

Gene3D:2.60.40.10	MapMan:20.7.1	EntrezGene:4349070	ProteinID:ABB47862.1	ProteinID:BAF26931.1	ProteinID:BAT11586.1
ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0005789	GO:GO:0016020	GO:GO:0016021	InterPro:IPR000535	InterPro:IPR013783	InterPro:Ig-like_fold
InterPro:MSP_dom	EnsemblPlantsGene:Os10g0507600	EnsemblPlants:Os10t0507600-01	PFAM:PF00635	PIRSF:PIRSF019693	PFscan:PS50202
PANTHER:PTHR10809	PANTHER:PTHR10809:SF47	InterPro:PapD-like_sf	UniProt:Q337D8	SUPFAM:SSF49354	UniParc:UPI00005E1F4F
InterPro:VAP	RefSeq:XP_015614839.1	SEG:seg	:	:	:

Description

PapD-like domain containing protein. (Os10t0507600-01)

Coordinates

chr10:-:19415610..19418684

Molecular Weight (calculated)

26643.2 Da

IEP (calculated)

5.072

GRAVY (calculated)

-0.324

Length

240 amino acids

Sequence
(BLAST)

001: MAASCDLVDV DPPELQFPFE LDKQISCPLR IANKTERTVA FKVKTTSPKK YCVRPNNGVV RPRSASVVVV TMQAQIVAPP DLQCKDKFLV QSVVVDDGLS
101: AKDITSQMFL RDENNMVEEV KLKVSYVMPP EPAMEIAEES DIPKRILVPM QRILDNGRSG SELSSGNVSL RSAEMGTELG SPLGRFVRNE DMLKTASPVV
201: ETRVHAGPDE QYLELSALVA KLTEEKKSAL EQNRKLREEL

Best Arabidopsis Sequence Match ( AT3G60600.1 )
(BLAST)

001: MSNIDLIGMS NRDLIGMSNS ELLTVEPLDL QFPFELKKQI SCSLYLTNKT DNNVAFKVKT TNPKKYCVRP NTGVVLPRST CEVLVTMQAQ KEAPSDMQCK
101: DKFLLQGVIA SPGVTAKEVT PEMFSKEAGH RVEETKLRVT YVAPPRPPSP VHEGSEEGSS PRASVSDNGH GSEFSFERFI VDNKAGHQEN TSEARALITK
201: LTEEKQSAIQ LNNRLQRELD QLRRESKKSQ SGGIPFMYVL LVGLIGLILG YIMKRT

Arabidopsis Description

PVA11Vesicle-associated protein 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ95]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.