Factsheet for Zm00001d032507_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
golgi 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, plasma membrane
Any Predictor:	cytosol, mitochondrion, plasma membrane
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER91402	Sorghum	cytosol	90.04	89.71
Os10t0507600-01	Rice	cytosol, plasma membrane	63.1	71.25
TraesCS1D01G163100.1	Wheat	cytosol	71.22	70.44
TraesCS1B01G204400.1	Wheat	cytosol	70.11	69.34
Zm00001d049553_P001	Maize	plasma membrane	45.39	50.41
Zm00001d051288_P001	Maize	cytosol	41.7	50.22
Zm00001d017390_P001	Maize	cytosol	40.96	49.33
Zm00001d024588_P001	Maize	cytosol, extracellular, mitochondrion	42.8	48.13
Zm00001d025939_P003	Maize	cytosol, golgi, plasma membrane	46.49	42.28
Zm00001d051383_P001	Maize	cytosol, plastid	34.32	35.36
Zm00001d036342_P001	Maize	cytosol	30.63	33.2
Zm00001d014260_P001	Maize	plastid	21.03	32.02
Zm00001d051329_P002	Maize	mitochondrion, plasma membrane, plastid	31.73	28.48
Zm00001d017448_P001	Maize	endoplasmic reticulum, golgi, plastid	32.47	28.39
Zm00001d010495_P002	Maize	cytosol	32.84	23.42
Zm00001d011904_P001	Maize	cytosol	31.0	21.48
Zm00001d042180_P002	Maize	cytosol	30.26	20.45
Zm00001d048612_P001	Maize	cytosol	19.56	7.49
TraesCSU01G255000.1	Wheat	cytosol	0.0	0.0

Protein Annotations

EntrezGene:103643384	Gene3D:2.60.40.10	MapMan:20.7.1	UniProt:A0A1D6KR67	ncoils:Coil	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020
GO:GO:0016021	InterPro:IPR000535	InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:MSP_dom	ProteinID:ONM05227.1
PFAM:PF00635	PIRSF:PIRSF019693	PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF47	InterPro:PapD-like_sf
SUPFAM:SSF49354	TMHMM:TMhelix	UniParc:UPI000221435E	InterPro:VAP	EnsemblPlantsGene:Zm00001d032507	EnsemblPlants:Zm00001d032507_P001
EnsemblPlants:Zm00001d032507_T001	SEG:seg	:	:	:	:

Description

Vesicle-associated protein 1-1

Coordinates

chr1:+:228905845..228912344

Molecular Weight (calculated)

29771.3 Da

IEP (calculated)

7.770

GRAVY (calculated)

-0.110

Length

271 amino acids

Sequence
(BLAST)

001: MASCDLLDVD PLELQFPFVL DKQIPCPLRL ANRTDRTVAF KVKTTNPRKY CVRPNNGIVP PRSLCTVVVT MQAQTVVPPD LQCKDKFMVQ SVVISDSLSA
101: KDITSQMFAK EGGNVLQEVK LKVAYVMPPE PPSEIAEEHD GLDRVLVPMQ RIVDNGKSTS ELSSGSVSLR SAEEFGSPVG RIVKSEEFLK AAGPAMETKT
201: YAGPGEQSHQ LSAIITKLTE EKNSALEQNR KLQVELELVR CEARKQQSAF SLVLLIAFGL LGIVLGYIVK K

Best Arabidopsis Sequence Match ( AT2G45140.1 )
(BLAST)

001: MSNELLTIDP VDLQFPFELK KQISCSLYLG NKTDNYVAFK VKTTNPKKYC VRPNTGVVHP RSSSEVLVTM QAQKEAPADL QCKDKFLLQC VVASPGATPK
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL VTKLTEEKNS AVQLNNRLQQ
201: ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT

Arabidopsis Description

PVA12Vesicle-associated protein 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHC8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.