CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012439.1-P	Field mustard	extracellular	99.55	99.55
CDY40267	Canola	extracellular	99.55	99.55
AT1G26820.1	Thale cress	extracellular	91.44	91.44
KRH74871	Soybean	endoplasmic reticulum	67.57	66.37
KRH70737	Soybean	extracellular	66.67	65.49
CDX96863	Canola	extracellular	64.86	63.16
CDX84041	Canola	extracellular	64.41	62.72
GSMUA_Achr7P21030_001	Banana	extracellular	59.46	59.46
CDY33761	Canola	extracellular	59.91	58.59
GSMUA_Achr5P23330_001	Banana	extracellular	59.01	57.71
CDY45186	Canola	extracellular	59.01	57.21
CDY62181	Canola	extracellular	58.56	56.77
CDY03023	Canola	extracellular	58.11	56.33
CDY09344	Canola	extracellular	58.56	56.03
Solyc05g007940.2.1	Tomato	extracellular	58.56	54.85
CDY33762	Canola	peroxisome	53.15	54.38
GSMUA_Achr4P00460_001	Banana	endoplasmic reticulum, extracellular, plastid	58.11	48.86
CDY33763	Canola	extracellular	48.2	43.85
CDX81620	Canola	extracellular	40.99	41.74
CDY60490	Canola	extracellular, plasma membrane, vacuole	31.53	27.34
CDY39709	Canola	extracellular	32.43	27.17
CDX81621	Canola	extracellular, nucleus, peroxisome	60.81	21.09

Protein Annotations

Gene3D:3.90.730.10	MapMan:35.1	GO:A0A078G7L3	UniProt:A0A078G7L3	EnsemblPlants:CDY20583	ProteinID:CDY20583
ProteinID:CDY20583.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518
GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
GO:GO:0033897	GO:GO:0090502	EnsemblPlantsGene:GSBRNA2T00012741001	InterPro:IPR036430	PFAM:PF00445	ScanProsite:PS00530
ScanProsite:PS00531	PANTHER:PTHR11240	PANTHER:PTHR11240:SF19	InterPro:RNase_T2-like	InterPro:RNase_T2-like_sf	InterPro:RNase_T2_His_AS_1
InterPro:RNase_T2_His_AS_2	InterPro:Ribonuclease_T2_eukaryotic	SUPFAM:SSF55895	SignalP:SignalP-noTM	UniParc:UPI0004EE59D8	:

Description

BnaC07g12500DBnaC07g12500D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G7L3]

Coordinates

chrLK032109:-:598962..600265

Molecular Weight (calculated)

25436.0 Da

IEP (calculated)

6.220

GRAVY (calculated)

-0.414

Length

222 amino acids

Sequence
(BLAST)

001: MKFFLCILAL QQLYVLSVAQ DFDFFYFVVQ WPGAYCDSRH SCCYPKTGKP AADFGIHGLW PNYKTGGWPQ NCNPDSTFDE LRVSDLMSNL RREWPTLSCP
101: SNDGVHFWTH EWEKHGTCAE SELDQHDYFE AGLKLKQKAN LLHALTNAGI KPDDKFYEIK DIERAIKEAI GFAPGIECNK DSSHNSQLYQ IYLCVDTSAS
201: NFINCPVMPH GRCDSRVQFP KF

Best Arabidopsis Sequence Match ( AT1G26820.1 )
(BLAST)

001: MKFFIFILAL QQLYVQSFAQ DFDFFYFVLQ WPGAYCDSRH SCCYPQTGKP AADFGIHGLW PNYKTGGWPQ NCNPDSRFDD LRVSDLMSDL QREWPTLSCP
101: SNDGMKFWTH EWEKHGTCAE SELDQHDYFE AGLKLKQKAN LLHALTNAGI KPDDKFYEMK DIENTIKQVV GFAPGIECNK DSSHNSQLYQ IYLCVDTSAS
201: KFINCPVMPH GRCDSRVQFP KF

Arabidopsis Description

RNS3Ribonuclease 3 [Source:UniProtKB/Swiss-Prot;Acc:P42815]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.