CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	peroxisome
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96863	Canola	extracellular	98.68	98.68
AT1G14220.1	Thale cress	extracellular	79.39	79.39
CDY33761	Canola	extracellular	75.0	75.33
CDY33762	Canola	peroxisome	61.84	64.98
CDY40267	Canola	extracellular	62.72	64.41
CDY20583	Canola	extracellular	62.72	64.41
KRH70737	Soybean	extracellular	62.28	62.83
KRH74871	Soybean	endoplasmic reticulum	62.28	62.83
GSMUA_Achr7P21030_001	Banana	extracellular	57.02	58.56
CDY45186	Canola	extracellular	57.46	57.21
GSMUA_Achr5P23330_001	Banana	extracellular	56.58	56.83
CDY62181	Canola	extracellular	57.02	56.77
CDY03023	Canola	extracellular	56.58	56.33
CDY09344	Canola	extracellular	57.02	56.03
Solyc05g007940.2.1	Tomato	extracellular	52.63	50.63
GSMUA_Achr4P00460_001	Banana	endoplasmic reticulum, extracellular, plastid	52.19	45.08
CDY33763	Canola	extracellular	46.05	43.03
CDX81620	Canola	extracellular	38.6	40.37
CDY60490	Canola	extracellular, plasma membrane, vacuole	34.21	30.47
CDY39709	Canola	extracellular	33.33	28.68
CDX81621	Canola	extracellular, nucleus, peroxisome	72.37	25.78

Protein Annotations

Gene3D:3.90.730.10	MapMan:35.1	GO:A0A078D3Y5	EnsemblPlants:CDX84041	ProteinID:CDX84041	ProteinID:CDX84041.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0005488
GO:GO:0016787	GO:GO:0033897	EnsemblPlantsGene:GSBRNA2T00139863001	InterPro:IPR036430	PFAM:PF00445	ScanProsite:PS00530
ScanProsite:PS00531	PANTHER:PTHR11240	PANTHER:PTHR11240:SF19	InterPro:RNase_T2-like	InterPro:RNase_T2-like_sf	InterPro:RNase_T2_His_AS_1
InterPro:RNase_T2_His_AS_2	InterPro:Ribonuclease_T2_eukaryotic	SUPFAM:SSF55895	SignalP:SignalP-noTM	UniParc:UPI0004EE6912	:

Description

BnaC08g16040D

Coordinates

chrLK031834:+:1886202..1887176

Molecular Weight (calculated)

26440.2 Da

IEP (calculated)

6.240

GRAVY (calculated)

-0.621

Length

228 amino acids

Sequence
(BLAST)

001: MGPKGWFILK VLMFQGLFIS HSQEQEDFDF FYLVLQWPGA YCDTKRSCCY PTSGKPAADF GIHGLWPNYK DGSYPSNCNP DSEFDKSQIT DLVSSLKKTW
101: PTLACPSNEG FKFWKHEWEK HGTCSESVMD QHEYFENSLK LRDRANLFQA LTNSGIKPDD RFYDLEKIRK AIKDEIGFTP GIECNKDPER NDQLHQIYIC
201: VDTSGTEFIK CPILPRERCP SRLQFAKF

Best Arabidopsis Sequence Match ( AT1G14220.1 )
(BLAST)

001: MGAKGCVNVL LKLLVFQGLF VSRPQEDFDF FYFVLQWPGA YCDTSRACCY PTSGKPAADF GIHGLWPNYN GGSWPSNCDP DSQFDRSQIS DLVSSLKKNW
101: PTLSCPSNEG FNFWEHEWEK HGTCSESVMD QHEYFENALK LKQKANLLQI LKNSGINPDD GFYNLDKITN AIKDGIGFTP GIECNKDPER NAQLHQIYIC
201: VDTSGTEFIE CPVLPRGSCP SQIQFSKF

Arabidopsis Description

F7A19.32 protein [Source:UniProtKB/TrEMBL;Acc:Q9XI64]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.