Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 3
- cytosol 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | cytosol | 79.1 | 79.1 |
| GSMUA_Achr8P00740_001 | Banana | cytosol | 61.69 | 72.51 |
| EES01977 | Sorghum | cytosol | 57.21 | 56.65 |
| Zm00001d042329_P001 | Maize | extracellular, mitochondrion, plasma membrane, plastid | 56.22 | 55.66 |
| Os01t0921600-01 | Rice | mitochondrion, plastid | 54.73 | 54.46 |
| Zm00001d012017_P002 | Maize | mitochondrion | 54.73 | 54.46 |
| GSMUA_Achr8P00730_001 | Banana | plasma membrane, vacuole | 20.4 | 53.95 |
| TraesCS3A01G429800.1 | Wheat | cytosol | 54.73 | 52.38 |
| TraesCS3B01G467700.1 | Wheat | golgi | 54.23 | 52.15 |
| TraesCS3D01G425100.1 | Wheat | cytosol | 53.73 | 51.67 |
| Zm00001d040209_P001 | Maize | cytosol | 33.33 | 41.1 |
| HORVU3Hr1G094550.2 | Barley | plastid | 30.85 | 27.68 |
| HORVU7Hr1G075380.6 | Barley | cytosol, plastid | 19.9 | 24.39 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:23.2.1.5 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005742 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0045040 |
| EnsemblPlantsGene:GSMUA_Achr8G09300_001 | EnsemblPlants:GSMUA_Achr8P09300_001 | EnsemblPlants:GSMUA_Achr8T09300_001 | InterPro:IPR011990 | UniProt:M0TNY3 | PFAM:PD102047 |
| PFAM:PF06552 | PANTHER:PTHR32409 | SUPFAM:SSF48452 | TMHMM:TMhelix | InterPro:TOM20_imprt_rcpt | InterPro:TPR-like_helical_dom_sf |
| UniParc:UPI000294D49A | SEG:seg | : | : | : | : |
Description
Mitochondrial import receptor subunit TOM20 [Source:GMGC_GENE;Acc:GSMUA_Achr8G09300_001]
Coordinates
chr8:-:6493126..6499545
Molecular Weight (calculated)
22244.4 Da
IEP (calculated)
6.304
GRAVY (calculated)
-0.299
Length
201 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLQPNDFDR LVFFEHARKA AEAAYAVNPL DADNLTRWGG ALLELSSFQS GDDSIKMVKD AISKLEEALG VNPSKHDTVW CLGNAHTSHA FFTPEHETAM
101: VYFDKATQCF KQAVELDPGN ELYLKSLDLS AKAPELHLEL QRQMASQQAP HVTTSASSRK EPKKKVSSDL KYDILGWAIL VVGIVVWVGM AKSHVPSPPP
201: R
101: VYFDKATQCF KQAVELDPGN ELYLKSLDLS AKAPELHLEL QRQMASQQAP HVTTSASSRK EPKKKVSSDL KYDILGWAIL VVGIVVWVGM AKSHVPSPPP
201: R
001: MEFSTADFER LIMFEHARKN SEAQYKNDPL DSENLLKWGG ALLELSQFQP IPEAKLMLND AISKLEEALT INPGKHQALW CIANAYTAHA FYVHDPEEAK
101: EHFDKATEYF QRAENEDPGN DTYRKSLDSS LKAPELHMQF MNQGMGQQIL GGGGGGGGGG MASSNVSQSS KKKKRNTEFT YDVCGWIILA CGIVAWVGMA
201: KSLGPPPPAR
101: EHFDKATEYF QRAENEDPGN DTYRKSLDSS LKAPELHMQF MNQGMGQQIL GGGGGGGGGG MASSNVSQSS KKKKRNTEFT YDVCGWIILA CGIVAWVGMA
201: KSLGPPPPAR
Arabidopsis Description
TOM20-2TOM20-2 [Source:UniProtKB/TrEMBL;Acc:A0A178W7F2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.