Factsheet for Os01t0921600-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

mitochondrion: 19010998
nucleus: 19621931
plastid: 21433289
mitochondrion: 23027867
plastid: 27992503

msms PMID: 23027867 doi

G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.

msms PMID: 19010998 doi

S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar

Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0200500-01
Os01t0276200-00
Os01t0673800-01
Os02t0269000-01
Os03t0323800-01
Os04t0644100-01
Os04t0678700-01
Os05t0520100-00
Os05t0529000-01
Os06t0179100-00
Os06t0645500-01
Os07t0656600-01
Os07t0656700-01
Os08t0400300-01
Os09t0363500-01
Os10t0496900-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27390.1	Os01t0276200-00	AT3G20000.1	17981999
AT1G27390.1	Os03t0323800-01	AT3G20000.1	17981999
AT3G27080.1	Os04t0678700-01	AT1G03630.1	21798944
AT3G27080.1	Os10t0496900-02	AT1G03630.1	21798944
AT3G27080.1	Os04t0644100-01	AT1G15760.1	21798944
AT3G27080.1	Os06t0179100-00	AT1G15760.1	21798944
AT3G27080.1	Os06t0645500-01	AT1G15760.1	21798944
AT3G27080.1	Os02t0269000-01	AT2G20130.1	21798944
AT3G27080.1	Os05t0529000-01	AT2G20130.1	21798944
AT3G27080.1	Os01t0673800-01	AT2G31040.1	21798944
AT3G27080.1	Os01t0200500-01	AT3G16310.1	21798944
AT3G27080.1	Os05t0520100-00	AT3G16310.1	21798944
AT3G27080.1	Os01t0276200-00	AT3G20000.1	17981999
AT3G27080.1	Os03t0323800-01	AT3G20000.1	17981999
AT3G27080.1	Os07t0656600-01	AT5G13720.1	21798944
AT3G27080.1	Os07t0656700-01	AT5G13720.1	21798944
AT5G40930.1	Os08t0400300-01	AT2G46550.1	21798944
AT5G40930.1	Os09t0363500-01	AT2G46550.1	21798944
AT5G40930.1	Os01t0276200-00	AT3G20000.1	17981999
AT5G40930.1	Os03t0323800-01	AT3G20000.1	17981999

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G467700.1	Wheat	golgi	79.21	76.56
EES01977	Sorghum	cytosol	76.24	75.86
TraesCS3A01G429800.1	Wheat	cytosol	78.71	75.71
TraesCS3D01G425100.1	Wheat	cytosol	77.72	75.12
Zm00001d042329_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid	75.25	74.88
Zm00001d012017_P002	Maize	mitochondrion	72.28	72.28
VIT_14s0068g02030.t01	Wine grape	cytosol	58.42	58.71
GSMUA_AchrUn_...	Banana	cytosol	57.92	58.21
Solyc02g068130.2.1	Tomato	plastid	58.42	57.84
GSMUA_Achr8P09300_001	Banana	cytosol	54.46	54.73
PGSC0003DMT400052223	Potato	cytosol	54.95	54.15
KRG94268	Soybean	nucleus	55.45	53.59
Solyc02g094140.2.1	Tomato	cytosol	53.96	53.43
GSMUA_Achr8P00730_001	Banana	plasma membrane, vacuole	19.8	52.63
KRH57705	Soybean	nucleus	53.96	51.9
KRH31475	Soybean	mitochondrion	50.49	50.75
AT5G40930.1	Thale cress	cytosol	46.04	49.73
PGSC0003DMT400056939	Potato	cytosol	40.59	48.52
KRG97423	Soybean	cytosol	50.99	47.47
PGSC0003DMT400056935	Potato	cytosol	44.55	46.88
GSMUA_Achr8P00740_001	Banana	cytosol	39.6	46.78
CDY34181	Canola	cytosol	45.54	46.23
Bra032980.1-P	Field mustard	cytosol	45.54	46.23
AT3G27080.1	Thale cress	cytosol	45.05	45.05
CDY28496	Canola	cytosol	45.05	45.05
AT1G27390.1	Thale cress	cytosol	46.04	44.29
CDY27615	Canola	cytosol	43.56	41.51
Bra032826.1-P	Field mustard	cytosol	43.56	41.51
CDX84923	Canola	cytosol	42.57	41.35
CDY03918	Canola	cytosol	41.09	39.9
HORVU3Hr1G094550.2	Barley	plastid	43.56	39.29
CDY11814	Canola	cytosol	39.6	38.46
CDY15710	Canola	cytosol	39.6	37.74
Bra030044.1-P	Field mustard	cytosol	39.6	37.21
Bra010946.1-P	Field mustard	cytosol	37.62	36.36
CDX90082	Canola	cytosol	37.13	36.06
CDY35747	Canola	cytosol	19.8	31.25
AT3G27070.2	Thale cress	plasma membrane	35.15	28.63

Protein Annotations

Gene3D:1.25.40.10	MapMan:23.2.1.5	EntrezGene:4327752	EMBL:AK071344	ProteinID:BAB86179.1	ProteinID:BAD88373.1
ProteinID:BAF07143.1	ProteinID:BAS75944.1	ProteinID:EEE55909.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005741
GO:GO:0005742	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0015031	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0045040	InterPro:IPR011990	EnsemblPlantsGene:Os01g0921600	EnsemblPlants:Os01t0921600-01
PFAM:PD102047	PFAM:PF06552	PANTHER:PTHR32409	UniProt:Q5JJI4	SUPFAM:SSF48452	TMHMM:TMhelix
InterPro:TOM20_imprt_rcpt	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00004C2C25	RefSeq:XP_015616070.1	SEG:seg	:

Description

TOM20Similar to Mitochondrial import receptor subunit TOM20 (Translocase of outer membrane 20 kDa subunit). (Os01t0921600-01)

Coordinates

chr1:+:40240810..40244636

Molecular Weight (calculated)

22604.6 Da

IEP (calculated)

5.337

GRAVY (calculated)

-0.529

Length

202 amino acids

Sequence
(BLAST)

001: MDMGAMSDPE RMFFFDLACQ NAKVTYEQNP HDADNLTRWG GALLELSQMR NGPESLKCLE DAESKLEEAL KIDPMKADAL WCLGNAQTSH GFFTSDTVKA
101: NEFFEKATQC FQKAVDVEPA NDLYRKSLDL SSKAPELHME IHRQMASQAS QAASSTSNTR QSRKKKKDSD FWYDVFGWVV LGVGMVVWVG LAKSNAPPQA
201: PR

Best Arabidopsis Sequence Match ( AT1G27390.1 )
(BLAST)

001: MEFSTADFER LIMFEHARKN SEAQYKNDPL DSENLLKWGG ALLELSQFQP IPEAKLMLND AISKLEEALT INPGKHQALW CIANAYTAHA FYVHDPEEAK
101: EHFDKATEYF QRAENEDPGN DTYRKSLDSS LKAPELHMQF MNQGMGQQIL GGGGGGGGGG MASSNVSQSS KKKKRNTEFT YDVCGWIILA CGIVAWVGMA
201: KSLGPPPPAR

Arabidopsis Description

TOM20-2TOM20-2 [Source:UniProtKB/TrEMBL;Acc:A0A178W7F2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.