CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
golgi 1
plastid 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH11076
KRH21197
KRH22653
KRH26074
KRH26664
KRH27209
KRH41254
KRH42923
KRH42926
KRH45251
KRH55334
KRH59035
KRH59036
KRH59988

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27700.1	KRH26074	AT1G03630.1	21798944
AT1G27700.1	KRH27209	AT1G03630.1	21798944
AT1G27700.1	KRH55334	AT1G03630.1	21798944
AT1G27700.1	KRH11076	AT4G19030.1	21798944
AT1G27700.1	KRH21197	AT4G19030.1	21798944
AT1G27700.1	KRH42923	AT4G19030.1	21798944
AT1G27700.1	KRH42926	AT4G19030.1	21798944
AT1G27700.1	KRH45251	AT4G19030.1	21798944
AT1G27700.1	KRH59035	AT4G19030.1	21798944
AT1G27700.1	KRH59036	AT4G19030.1	21798944
AT1G27700.1	KRH22653	AT5G22290.1	21798944
AT1G27700.1	KRH26664	AT5G22290.1	21798944
AT1G27700.1	KRH41254	AT5G41600.1	21798944
AT1G27700.1	KRH59988	AT5G41600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61384	Soybean	cytosol	76.86	88.2
KRH05610	Soybean	nucleus	56.3	65.57
VIT_18s0001g09380.t01	Wine grape	nucleus	47.81	53.91
Solyc04g078130.2.1	Tomato	cytosol, golgi, nucleus	44.99	51.78
PGSC0003DMT400055415	Potato	cytosol	46.02	51.59
Bra010923.1-P	Field mustard	cytosol, golgi, nucleus	36.25	48.96
CDX90104	Canola	cytosol, golgi, nucleus	36.25	48.96
Solyc12g088440.1.1	Tomato	nucleus	42.67	48.54
PGSC0003DMT400030171	Potato	nucleus	42.42	48.39
CDY67977	Canola	cytosol, golgi, nucleus	35.73	47.6
CDY03940	Canola	cytosol, endoplasmic reticulum, nucleus	35.48	47.59
AT1G27700.1	Thale cress	cytosol	36.25	47.47
CDY60275	Canola	cytosol	34.7	47.04
Bra030059.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	34.45	46.69
GSMUA_Achr10P...	Banana	cytosol	33.42	41.8
GSMUA_Achr6P30760_001	Banana	cytosol, golgi, nucleus	35.22	39.6
EER92668	Sorghum	cytosol	34.96	37.88
GSMUA_Achr4P10890_001	Banana	cytosol, golgi, nucleus	34.7	37.71
Os03t0207200-01	Rice	cytosol	34.96	37.36
Os10t0343100-01	Rice	cytosol	35.22	37.33
TraesCS4B01G255000.1	Wheat	cytosol	33.42	36.52
Zm00001d028054_P002	Maize	cytosol	36.25	36.34
TraesCS4A01G049700.1	Wheat	cytosol, golgi, nucleus	33.16	36.24
TraesCS4D01G254800.1	Wheat	cytosol	33.16	36.24
KRG90327	Soybean	cytosol	26.74	31.61
KRH02874	Soybean	cytosol	25.71	30.4
HORVU4Hr1G069400.3	Barley	plastid	33.93	30.14

Protein Annotations

Gene3D:1.20.58.90	EntrezGene:100815067	MapMan:35.2	EMBL:ACUP02003404	EnsemblPlantsGene:GLYMA_06G044900	GO:GO:0000149
GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0006906	GO:GO:0008150
GO:GO:0009987	GO:GO:0012505	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192
GO:GO:0031201	GO:GO:0048193	GO:GO:0048278	UniProt:I1K847	EnsemblPlants:KRH52070	ProteinID:KRH52070
ProteinID:KRH52070.1	PFAM:PF09177	PANTHER:PTHR19957	PANTHER:PTHR19957:SF118	InterPro:SNARE	SUPFAM:SSF47661
InterPro:Syntaxin-6_N	TMHMM:TMhelix	UniParc:UPI00023C31D3	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr6:-:3405559..3407886

Molecular Weight (calculated)

43970.7 Da

IEP (calculated)

7.058

GRAVY (calculated)

-0.428

Length

389 amino acids

Sequence
(BLAST)

001: MASSFDRWEK DPFFNAAEEV QESADRMEST YRTWIHARRD ASSPWNCDEL RRDLETTLGT AKWQLEEFER AARSSYSRVS SEDARNRHRD FIHAIGDKIQ
101: KVEHSLQESV HSGSKASLPW TRLDEGERDE LASFLSGIPV LIKCVGRDNE SLQANCSSNL HVSSGWGSSE AALEKSRGHR RAASADADIG TWKITVSDDV
201: QQSSSSNGSS GPTPMHKVAS LSGFFGSMET ISKFKWPKNG YRKLKAVNPC EEEDKALLPP AGLNGGIEAY YERSKSSLGN CNECYDKQLH GWYGALHRQL
301: QRSQYQMQYN RPVQIAVWAV ILLCFIGRPF FLSIICMAFL MMLSIYPPPP PSFGYTTFFC PILVFPGSFV REAFSWYHCS CLFMLSLWA

Best Arabidopsis Sequence Match ( AT1G27700.1 )
(BLAST)

001: MTTSLDRWEK DPFFPAAEEV QESADRMESA YRTWLNGKRD SSKVWDSEQL HRDLHAALGT TKWQLDEFQK AVKSSYDNRL SDETRDRHRE FTFVMEAQVS
101: KIEKSLKEAA QSDGKGTPRW VRLDEDDRNE LALFLTGPSE SAKANPNGHR RTASAAEFSA WNIAVSDDGL VKKSCDEPVV RPPRKVPSFS GFLNYMDPVS
201: KHCNRKWKGL DRQGDSDAAL LPIQANQQDM NGCSERGKSC MECEEDCYEK QLHGWYGALQ RQLQRSQYRM RYSKSVHAAI WIILLVFLIV VVAVHSM

Arabidopsis Description

At1g27700/T22C5_14 [Source:UniProtKB/TrEMBL;Acc:Q940U5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.