Factsheet for HORVU4Hr1G069400.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 1
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G044680.1
HORVU1Hr1G082010.3
HORVU2Hr1G006120.3
HORVU2Hr1G020490.1
HORVU2Hr1G119050.2
HORVU2Hr1G119090.2
HORVU3Hr1G030760.2
HORVU3Hr1G069970.2
HORVU4Hr1G073090.1
HORVU5Hr1G104070.1
HORVU7Hr1G075700.2
HORVU7Hr1G081290.4
HORVU7Hr1G088900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27700.1	HORVU1Hr1G044680.1	AT1G03630.1	21798944
AT1G27700.1	HORVU2Hr1G006120.3	AT1G03630.1	21798944
AT1G27700.1	HORVU2Hr1G020490.1	AT1G03630.1	21798944
AT1G27700.1	HORVU2Hr1G119050.2	AT1G03630.1	21798944
AT1G27700.1	HORVU2Hr1G119090.2	AT1G03630.1	21798944
AT1G27700.1	HORVU4Hr1G073090.1	AT1G03630.1	21798944
AT1G27700.1	HORVU5Hr1G104070.1	AT1G03630.1	21798944
AT1G27700.1	HORVU7Hr1G088900.1	AT4G19030.1	21798944
AT1G27700.1	HORVU1Hr1G082010.3	AT5G41600.1	21798944
AT1G27700.1	HORVU3Hr1G030760.2	AT5G41600.1	21798944
AT1G27700.1	HORVU3Hr1G069970.2	AT5G41600.1	21798944
AT1G27700.1	HORVU7Hr1G075700.2	AT5G41600.1	21798944
AT1G27700.1	HORVU7Hr1G081290.4	AT5G41600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G049700.1	Wheat	cytosol, golgi, nucleus	75.8	93.26
TraesCS4D01G254800.1	Wheat	cytosol	74.2	91.29
TraesCS4B01G255000.1	Wheat	cytosol	73.29	90.17
EER92668	Sorghum	cytosol	56.85	69.36
Os03t0207200-01	Rice	cytosol	52.74	63.46
Zm00001d028054_P002	Maize	cytosol	54.11	61.08
GSMUA_Achr4P10890_001	Banana	cytosol, golgi, nucleus	36.07	44.13
GSMUA_Achr10P...	Banana	cytosol	29.45	41.48
CDY60275	Canola	cytosol	25.57	39.02
Bra030059.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	25.57	39.02
KRH05610	Soybean	nucleus	29.45	38.62
CDY03940	Canola	cytosol, endoplasmic reticulum, nucleus	25.57	38.62
KRH61384	Soybean	cytosol	29.45	38.05
VIT_18s0001g09380.t01	Wine grape	nucleus	29.0	36.81
Solyc04g078130.2.1	Tomato	cytosol, golgi, nucleus	28.31	36.69
PGSC0003DMT400055415	Potato	cytosol	28.77	36.31
Bra010923.1-P	Field mustard	cytosol, golgi, nucleus	23.74	36.11
CDX90104	Canola	cytosol, golgi, nucleus	23.52	35.76
CDY67977	Canola	cytosol, golgi, nucleus	23.74	35.62
AT1G27700.1	Thale cress	cytosol	23.97	35.35
PGSC0003DMT400030171	Potato	nucleus	27.17	34.9
Solyc12g088440.1.1	Tomato	nucleus	27.17	34.8
KRH52070	Soybean	cytosol, nucleus, peroxisome	30.14	33.93

Protein Annotations

EnsemblPlants:HORVU4Hr1G069400.3	EnsemblPlantsGene:HORVU4Hr1G069400	Gene3D:1.20.58.90	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	GO:GO:0048193	InterPro:SNARE	InterPro:Syntaxin-6_N
PANTHER:PTHR34949	PANTHER:PTHR34949:SF3	PFAM:PF09177	SEG:seg	SUPFAM:SSF47661	TMHMM:TMhelix
UniParc:UPI000B483522	UniProt:A0A287PIQ3	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chrchr4H:-:570685164..570688149

Molecular Weight (calculated)

47546.0 Da

IEP (calculated)

9.075

GRAVY (calculated)

-0.437

Length

438 amino acids

Sequence
(BLAST)

001: EIAATQPKAK QSKATNPGQT TNREAARPSL SHPPATANAN ANAKVFFLPF PPLLSPPNHH GGSPVPSRLA MATSFDRWEK DPFFLAAEEV QESADRMESV
101: YKIWVQERSG GDSALAGEVG AVELRRELHT ALGTAKWQLD ELERAIRSND EVVSAGKDTR ALHSNFVAAI AYRILEVENN LNASNVAEGR GTLSWIHLDE
201: SERDDLAAFL SASPPQHQDK VVTIPSAGDI QVGSNPARVR KNISADSSND SSGSADLSSA RAKEDAHRGH RRSVSASADI GSSPMAFPNE REGAAEQSSL
301: GPHRAPLLNI VKACGLPSAL KPKPAIKYKK GAVRWAHADK HDVEEGLPLT NPQLSQGLDG YSERSMSYLN TCDGVTYIKK LYGWFGALRK KLQRSQYQIR
401: YGRPVQLTVF ALAVLIICKF ACLICSLFYS IQATKNKG

Best Arabidopsis Sequence Match ( AT1G27700.1 )
(BLAST)

001: MTTSLDRWEK DPFFPAAEEV QESADRMESA YRTWLNGKRD SSKVWDSEQL HRDLHAALGT TKWQLDEFQK AVKSSYDNRL SDETRDRHRE FTFVMEAQVS
101: KIEKSLKEAA QSDGKGTPRW VRLDEDDRNE LALFLTGPSE SAKANPNGHR RTASAAEFSA WNIAVSDDGL VKKSCDEPVV RPPRKVPSFS GFLNYMDPVS
201: KHCNRKWKGL DRQGDSDAAL LPIQANQQDM NGCSERGKSC MECEEDCYEK QLHGWYGALQ RQLQRSQYRM RYSKSVHAAI WIILLVFLIV VVAVHSM

Arabidopsis Description

At1g27700/T22C5_14 [Source:UniProtKB/TrEMBL;Acc:Q940U5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.