Factsheet for GSMUA_Achr10P11450_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr3P14270_001
GSMUA_Achr3P15760_001
GSMUA_Achr3P31920_001
GSMUA_Achr4P08400_001
GSMUA_Achr4P10230_001
GSMUA_Achr5P06850_001
GSMUA_Achr6P31860_001
GSMUA_Achr7P04280_001
GSMUA_Achr8P27830_001
GSMUA_Achr9P05440_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27700.1	GSMUA_Achr11P...	AT1G03630.1	21798944
AT1G27700.1	GSMUA_Achr3P14270_001	AT1G03630.1	21798944
AT1G27700.1	GSMUA_Achr7P04280_001	AT1G03630.1	21798944
AT1G27700.1	GSMUA_Achr4P10230_001	AT4G19030.1	21798944
AT1G27700.1	GSMUA_Achr10P...	AT5G41600.1	21798944
AT1G27700.1	GSMUA_Achr3P15760_001	AT5G41600.1	21798944
AT1G27700.1	GSMUA_Achr3P31920_001	AT5G41600.1	21798944
AT1G27700.1	GSMUA_Achr4P08400_001	AT5G41600.1	21798944
AT1G27700.1	GSMUA_Achr5P06850_001	AT5G41600.1	21798944
AT1G27700.1	GSMUA_Achr6P31860_001	AT5G41600.1	21798944
AT1G27700.1	GSMUA_Achr8P27830_001	AT5G41600.1	21798944
AT1G27700.1	GSMUA_Achr9P05440_001	AT5G41600.1	21798944
AT1G27700.1	GSMUA_AchrUn_...	AT5G41600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P10890_001	Banana	cytosol, golgi, nucleus	54.66	47.49
GSMUA_Achr6P30760_001	Banana	cytosol, golgi, nucleus	46.95	42.2
Os10t0343100-01	Rice	cytosol	47.91	40.6
Os03t0207200-01	Rice	cytosol	46.62	39.84
EER92668	Sorghum	cytosol	45.98	39.83
KRH61384	Soybean	cytosol	41.8	38.35
Bra030059.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	35.37	38.33
CDY60275	Canola	cytosol	35.37	38.33
TraesCS4D01G254800.1	Wheat	cytosol	43.73	38.2
KRH05610	Soybean	nucleus	40.84	38.02
VIT_18s0001g09380.t01	Wine grape	nucleus	42.12	37.97
CDY03940	Canola	cytosol, endoplasmic reticulum, nucleus	35.37	37.93
Zm00001d028054_P002	Maize	cytosol	47.27	37.89
Solyc04g078130.2.1	Tomato	cytosol, golgi, nucleus	41.16	37.87
TraesCS4A01G049700.1	Wheat	cytosol, golgi, nucleus	43.09	37.64
CDX90104	Canola	cytosol, golgi, nucleus	34.73	37.5
PGSC0003DMT400055415	Potato	cytosol	41.8	37.46
TraesCS4B01G255000.1	Wheat	cytosol	42.77	37.36
Bra010923.1-P	Field mustard	cytosol, golgi, nucleus	34.41	37.15
CDY67977	Canola	cytosol, golgi, nucleus	34.73	36.99
Solyc12g088440.1.1	Tomato	nucleus	39.23	35.67
PGSC0003DMT400030171	Potato	nucleus	38.91	35.48
AT1G27700.1	Thale cress	cytosol	33.44	35.02
KRH52070	Soybean	cytosol, nucleus, peroxisome	41.8	33.42
GSMUA_Achr2P04930_001	Banana	cytosol	34.73	31.4
GSMUA_AchrUn_...	Banana	cytosol, golgi, nucleus	36.01	30.85
GSMUA_Achr1P10310_001	Banana	cytosol	35.37	29.57
HORVU4Hr1G069400.3	Barley	plastid	41.48	29.45
GSMUA_AchrUn_...	Banana	nucleus	14.47	10.64

Protein Annotations

EnsemblPlants:GSMUA_Achr10P11450_001	EnsemblPlants:GSMUA_Achr10T11450_001	EnsemblPlantsGene:GSMUA_Achr10G11450_001	Gene3D:1.20.58.90	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	GO:GO:0048193	InterPro:SNARE
InterPro:Syntaxin-6_N	ncoils:Coil	PANTHER:PTHR34949	PANTHER:PTHR34949:SF3	PFAM:PF09177	SEG:seg
SUPFAM:SSF47661	TMHMM:TMhelix	UniParc:UPI000296CA67	UniProt:M0RHC1	MapMan:35.2	:

Description

Putative syntaxin 6, N-terminal domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G11450_001]

Coordinates

chr10:+:20909814..20914305

Molecular Weight (calculated)

35167.4 Da

IEP (calculated)

5.503

GRAVY (calculated)

-0.472

Length

311 amino acids

Sequence
(BLAST)

001: MAASFQQWEK DPFFSAADEV QESADRMESL YRLYIQERNN AAKATTGVEF ASGELRRELR TALGTAKWQL EELERAVRSN DDACSAGEDT RVRHDKFIVA
101: IRSQISMVED CLRQSNLELG ETAVAWVRLN DGERDELARF LSGPLQAEDV PKLHGHASCA TTDVGSWAIG IPDEGEDTSG RLPDDRPNFV SRAIFSSAAL
201: SDALESTPRM RWLRNGLGNW RGRFQHSLVG YIPLKNDQLG QEINACYGRS KSCLRYCRED INDKQLYGCL GAFQRQLQRS QYQIQYGRPI QIILWATLAV
301: TLMVTFVRYI G

Best Arabidopsis Sequence Match ( AT1G27700.1 )
(BLAST)

001: MTTSLDRWEK DPFFPAAEEV QESADRMESA YRTWLNGKRD SSKVWDSEQL HRDLHAALGT TKWQLDEFQK AVKSSYDNRL SDETRDRHRE FTFVMEAQVS
101: KIEKSLKEAA QSDGKGTPRW VRLDEDDRNE LALFLTGPSE SAKANPNGHR RTASAAEFSA WNIAVSDDGL VKKSCDEPVV RPPRKVPSFS GFLNYMDPVS
201: KHCNRKWKGL DRQGDSDAAL LPIQANQQDM NGCSERGKSC MECEEDCYEK QLHGWYGALQ RQLQRSQYRM RYSKSVHAAI WIILLVFLIV VVAVHSM

Arabidopsis Description

At1g27700/T22C5_14 [Source:UniProtKB/TrEMBL;Acc:Q940U5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.