CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
peroxisome 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, nucleus
Any Predictor:	cytosol, endoplasmic reticulum, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	peroxisome
WoLF PSORT:	endoplasmic reticulum
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70995
CDX78905
CDX88803
CDX89877
CDX92368
CDX98596
CDX99411
CDY01565
CDY09128
CDY15470
CDY18175
CDY35676
CDY51384

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27700.1	CDX89877	AT1G03630.1	21798944
AT1G27700.1	CDY15470	AT1G03630.1	21798944
AT1G27700.1	CDY18175	AT1G03630.1	21798944
AT1G27700.1	CDY51384	AT1G03630.1	21798944
AT1G27700.1	CDX78905	AT4G19030.1	21798944
AT1G27700.1	CDX98596	AT4G19030.1	21798944
AT1G27700.1	CDX99411	AT4G19030.1	21798944
AT1G27700.1	CDY01565	AT4G19030.1	21798944
AT1G27700.1	CDX70995	AT5G22290.1	21798944
AT1G27700.1	CDX88803	AT5G22290.1	21798944
AT1G27700.1	CDX92368	AT5G22290.1	21798944
AT1G27700.1	CDY09128	AT5G22290.1	21798944
AT1G27700.1	CDY35676	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY60275	Canola	cytosol	90.34	91.29
AT1G27700.1	Thale cress	cytosol	75.17	73.4
CDX90104	Canola	cytosol, golgi, nucleus	71.38	71.88
CDY67977	Canola	cytosol, golgi, nucleus	70.34	69.86
VIT_18s0001g09380.t01	Wine grape	nucleus	52.76	44.35
KRH05610	Soybean	nucleus	47.93	41.62
KRH61384	Soybean	cytosol	47.93	41.0
PGSC0003DMT400030171	Potato	nucleus	47.93	40.76
Solyc12g088440.1.1	Tomato	nucleus	47.59	40.35
Solyc04g078130.2.1	Tomato	cytosol, golgi, nucleus	46.55	39.94
PGSC0003DMT400055415	Potato	cytosol	46.55	38.9
KRH52070	Soybean	cytosol, nucleus, peroxisome	47.59	35.48
GSMUA_Achr10P...	Banana	cytosol	37.93	35.37
Os10t0343100-01	Rice	cytosol	43.45	34.33
GSMUA_Achr6P30760_001	Banana	cytosol, golgi, nucleus	40.69	34.1
GSMUA_Achr4P10890_001	Banana	cytosol, golgi, nucleus	41.72	33.8
EER92668	Sorghum	cytosol	41.38	33.43
TraesCS4D01G254800.1	Wheat	cytosol	40.0	32.58
Zm00001d028054_P002	Maize	cytosol	42.76	31.96
Os03t0207200-01	Rice	cytosol	40.0	31.87
TraesCS4A01G049700.1	Wheat	cytosol, golgi, nucleus	38.62	31.46
CDY12994	Canola	cytosol, golgi	29.66	31.27
TraesCS4B01G255000.1	Wheat	cytosol	38.28	31.18
CDY28171	Canola	cytosol	29.31	30.47
CDY14181	Canola	golgi	28.97	29.89
CDY49304	Canola	cytosol, golgi	27.93	29.78
CDY03541	Canola	cytosol, golgi	28.62	29.54
CDX68636	Canola	cytosol	29.31	28.43
HORVU4Hr1G069400.3	Barley	plastid	38.62	25.57
CDY14469	Canola	cytosol, golgi	28.62	23.12

Protein Annotations

EnsemblPlants:CDY03940	EnsemblPlantsGene:GSBRNA2T00117449001	Gene3D:1.20.58.90	GO:A0A078EPN8	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016192	GO:GO:0048193	InterPro:SNARE	InterPro:Syntaxin-6_N
PANTHER:PTHR19957	PANTHER:PTHR19957:SF118	PFAM:PF09177	ProteinID:CDY03940	ProteinID:CDY03940.1	SEG:seg
SUPFAM:SSF47661	TMHMM:TMhelix	UniParc:UPI0004EE1715	MapMan:35.2	:	:

Description

BnaC07g11650D

Coordinates

chrLK031947:-:961701..963170

Molecular Weight (calculated)

33241.1 Da

IEP (calculated)

6.719

GRAVY (calculated)

-0.705

Length

290 amino acids

Sequence
(BLAST)

001: MTTSLDRWEK DPFFPAAEEV QESADRMESA YRTWRIHGKQ GSSNVWDSEQ LHRDLHAALG TTKWQLDEFQ RAVQSSYGNR LSDDTRDRHR EFTFAMEAQV
101: AKIENSLKEA ARSDGKGTPR WVRLDEDDRN ELALFLTGPS ESERKQQHRR AASATPDIGA LNIAVVSDEK PSGEPLVRKV PSVSGFLNHM EPKNCIRKLK
201: ALDRQGDSDA AALLPIQTNQ QVVNGCFERD KSCMECEEDC YDKQLHGWYG ALQRQLQRSQ YQMRYSKSLQ ATIWILLLVF LIVVVAVHRM

Best Arabidopsis Sequence Match ( AT1G27700.1 )
(BLAST)

001: MTTSLDRWEK DPFFPAAEEV QESADRMESA YRTWLNGKRD SSKVWDSEQL HRDLHAALGT TKWQLDEFQK AVKSSYDNRL SDETRDRHRE FTFVMEAQVS
101: KIEKSLKEAA QSDGKGTPRW VRLDEDDRNE LALFLTGPSE SAKANPNGHR RTASAAEFSA WNIAVSDDGL VKKSCDEPVV RPPRKVPSFS GFLNYMDPVS
201: KHCNRKWKGL DRQGDSDAAL LPIQANQQDM NGCSERGKSC MECEEDCYEK QLHGWYGALQ RQLQRSQYRM RYSKSVHAAI WIILLVFLIV VVAVHSM

Arabidopsis Description

At1g27700/T22C5_14 [Source:UniProtKB/TrEMBL;Acc:Q940U5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.