Factsheet for Solyc04g078130.2.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g071920.2.1
Solyc03g005980.2.1
Solyc06g074170.2.1
Solyc07g054210.2.1
Solyc08g081730.2.1
Solyc10g006900.2.1
Solyc11g068750.1.1
Solyc12g013710.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27700.1	Solyc07g054210.2.1	AT1G03630.1	21798944
AT1G27700.1	Solyc10g006900.2.1	AT1G03630.1	21798944
AT1G27700.1	Solyc12g013710.1.1	AT1G03630.1	21798944
AT1G27700.1	Solyc02g071920.2.1	AT4G19030.1	21798944
AT1G27700.1	Solyc03g005980.2.1	AT4G19030.1	21798944
AT1G27700.1	Solyc06g074170.2.1	AT5G22290.1	21798944
AT1G27700.1	Solyc11g068750.1.1	AT5G22290.1	21798944
AT1G27700.1	Solyc08g081730.2.1	AT5G41600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400055415	Potato	cytosol	94.08	91.64
Solyc12g088440.1.1	Tomato	nucleus	60.35	59.65
KRH05610	Soybean	nucleus	51.78	52.4
KRH61384	Soybean	cytosol	52.07	51.92
VIT_18s0001g09380.t01	Wine grape	nucleus	52.66	51.59
Bra010923.1-P	Field mustard	cytosol, golgi, nucleus	40.24	47.22
CDX90104	Canola	cytosol, golgi, nucleus	40.24	47.22
Bra030059.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	39.94	47.04
CDY67977	Canola	cytosol, golgi, nucleus	40.53	46.92
CDY60275	Canola	cytosol	39.65	46.69
CDY03940	Canola	cytosol, endoplasmic reticulum, nucleus	39.94	46.55
AT1G27700.1	Thale cress	cytosol	40.53	46.13
KRH52070	Soybean	cytosol, nucleus, peroxisome	51.78	44.99
GSMUA_Achr10P...	Banana	cytosol	37.87	41.16
GSMUA_Achr6P30760_001	Banana	cytosol, golgi, nucleus	40.24	39.31
Os10t0343100-01	Rice	cytosol	41.12	37.87
GSMUA_Achr4P10890_001	Banana	cytosol, golgi, nucleus	39.35	37.15
EER92668	Sorghum	cytosol	39.05	36.77
TraesCS4D01G254800.1	Wheat	cytosol	36.39	34.55
Zm00001d028054_P002	Maize	cytosol	39.65	34.54
Os03t0207200-01	Rice	cytosol	36.69	34.07
TraesCS4B01G255000.1	Wheat	cytosol	35.8	33.99
TraesCS4A01G049700.1	Wheat	cytosol, golgi, nucleus	35.8	33.99
HORVU4Hr1G069400.3	Barley	plastid	36.69	28.31

Protein Annotations

Gene3D:1.20.58.90	MapMan:35.2	GO:GO:0000149	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0006886	GO:GO:0006906	GO:GO:0008150	GO:GO:0009987	GO:GO:0012505	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0031201	GO:GO:0048193	GO:GO:0048278
UniProt:K4BUQ0	PFAM:PF09177	PANTHER:PTHR19957	PANTHER:PTHR19957:SF118	InterPro:SNARE	SUPFAM:SSF47661
EnsemblPlantsGene:Solyc04g078130.2	EnsemblPlants:Solyc04g078130.2.1	InterPro:Syntaxin-6_N	TMHMM:TMhelix	UniParc:UPI0002766866	:

Description

No Description!

Coordinates

chr4:+:62958607..62965708

Molecular Weight (calculated)

38605.0 Da

IEP (calculated)

6.322

GRAVY (calculated)

-0.716

Length

338 amino acids

Sequence
(BLAST)

001: MASHFDRWEK DPFFSAAEEV QESADRMEST YRTWIHALKD TSGSWNCDAL RRDLRTTLGT AKWQLEEFDR AVRSSYNSKS ADDARDRHHE FFIAIDNQIR
101: KVEKSLNESA VSQGKPPLPW VRLDEGEVDE LAAFLSGPST SSAGITHAKV HGVELQVPKW EENVNQSLLE CSQNPPHSEE GVLGEAIDEK FLGHRRTASA
201: SADIGAWQIA LGNDISIKEP ASPPRRIPSY QGLLNAVESV KELKWPKNGY RKLKFNQEAD NTLPRSQPPT RNTNTCYDRN KSCLDGCDDC YDKQLYGWYG
301: AVQRQLQRSQ YYMQYRRPVR IVFSVFLLIF LIASLQQE

Best Arabidopsis Sequence Match ( AT1G27700.1 )
(BLAST)

001: MTTSLDRWEK DPFFPAAEEV QESADRMESA YRTWLNGKRD SSKVWDSEQL HRDLHAALGT TKWQLDEFQK AVKSSYDNRL SDETRDRHRE FTFVMEAQVS
101: KIEKSLKEAA QSDGKGTPRW VRLDEDDRNE LALFLTGPSE SAKANPNGHR RTASAAEFSA WNIAVSDDGL VKKSCDEPVV RPPRKVPSFS GFLNYMDPVS
201: KHCNRKWKGL DRQGDSDAAL LPIQANQQDM NGCSERGKSC MECEEDCYEK QLHGWYGALQ RQLQRSQYRM RYSKSVHAAI WIILLVFLIV VVAVHSM

Arabidopsis Description

At1g27700/T22C5_14 [Source:UniProtKB/TrEMBL;Acc:Q940U5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.