CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68636	Canola	cytosol	89.96	83.95
Bra011176.1-P	Field mustard	cytosol	92.47	78.42
CDY14181	Canola	golgi	67.74	67.26
CDY03541	Canola	cytosol, golgi	67.38	66.9
AT4G30240.1	Thale cress	cytosol, golgi	68.82	64.0
CDY49304	Canola	cytosol, golgi	53.76	55.15
VIT_11s0052g00960.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	32.97	54.12
CDY12994	Canola	cytosol, golgi	51.61	52.36
CDY14469	Canola	cytosol, golgi	66.31	51.53
KRH02874	Soybean	cytosol	49.1	41.64
KRG90327	Soybean	cytosol	48.03	40.73
GSMUA_Achr2P04930_001	Banana	cytosol	38.35	31.1
CDY03940	Canola	cytosol, endoplasmic reticulum, nucleus	30.47	29.31
CDX90104	Canola	cytosol, golgi, nucleus	30.11	29.17
CDY67977	Canola	cytosol, golgi, nucleus	30.11	28.77
GSMUA_AchrUn_...	Banana	cytosol, golgi, nucleus	37.28	28.65
GSMUA_Achr1P10310_001	Banana	cytosol	37.99	28.49
CDY60275	Canola	cytosol	29.03	28.22
EES14780	Sorghum	cytosol, golgi, nucleus	32.26	25.21
Zm00001d024418_P004	Maize	cytosol	32.62	24.66
Os08t0244100-01	Rice	cytosol, golgi, nucleus	29.39	22.71

Protein Annotations

Gene3D:1.20.58.90	MapMan:35.2	GO:A0A078GRT6	UniProt:A0A078GRT6	EnsemblPlants:CDY28171	ProteinID:CDY28171
ProteinID:CDY28171.1	ncoils:Coil	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0016192	GO:GO:0048193	EnsemblPlantsGene:GSBRNA2T00039886001	PFAM:PF09177	PANTHER:PTHR34949
PANTHER:PTHR34949:SF3	InterPro:SNARE	SUPFAM:SSF47661	InterPro:Syntaxin-6_N	TMHMM:TMhelix	UniParc:UPI0004EF1F35
SEG:seg	:	:	:	:	:

Description

BnaA01g06780DBnaA01g06780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GRT6]

Coordinates

chrLK032216:-:102049..103924

Molecular Weight (calculated)

32026.0 Da

IEP (calculated)

6.168

GRAVY (calculated)

-0.387

Length

279 amino acids

Sequence
(BLAST)

001: MMVANSFDLW QKDVFFSAAE EVQESADAME SAYRVWVKEK RQGRVTVESD QLCIELQAAL STAKWQLEEF ERAVRLSHGH CRDDTTLTRH KQFVNAIENQ
101: IYRVHSALQE ALTENGKQKP LRLVDLNKEE RDDLAMFLSG SSLTSESSIN FRDSSTSSCV IDIDEGGSPE SADAIIRVQQ ADKRFGTRRT WSSPNVPNVT
201: ALRVSVPVDV EVEEKRKRLV FDVEDTPKEK GSKPLFGYNL IFDRVRCYQR RFRVPYSRPV QLVLSFTLIL FLLLMFGVY

Best Arabidopsis Sequence Match ( AT4G30240.1 )
(BLAST)

001: MMVANSFDLW QKDVFFSAAE EVQESADIME SAYRLWFKEK RDGRVSVESD ELCKELQAAL STAKWQLEEF ERAVSLSHGN CRDDTTLTRH KQFVTAIENQ
101: IYQVESTLLE SLSENGKQPL RWVDLNKEER DDLAMFLSGS SQTSESLNSD SINLRDSSTS SVAENPRGIN GRREGRCYGD SPDCVIDIDD IGSPESADKK
201: GGTRRTWSSP NVPNISALRI NVPVNAKEEE REKFLSHIED TPKEKGAKPM FWLQRCRDYN QLFDRVKVYQ RRFRVPLSRP IKLILSLTLI LILLLFILRT

Arabidopsis Description

AT4g30240/F9N11_90 [Source:UniProtKB/TrEMBL;Acc:Q944G8]
SUBAcon: [golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.