Subcellular Localization
min:
: max
Winner_takes_all: golgi, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 3
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY14181 | Canola | golgi | 67.0 | 71.53 |
| Bra010294.1-P | Field mustard | golgi | 67.0 | 71.28 |
| CDY03541 | Canola | cytosol, golgi | 66.33 | 70.82 |
| CDY28171 | Canola | cytosol | 64.0 | 68.82 |
| CDX68636 | Canola | cytosol | 67.0 | 67.22 |
| Bra011176.1-P | Field mustard | cytosol | 66.33 | 60.49 |
| CDY14469 | Canola | cytosol, golgi | 66.33 | 55.43 |
| VIT_11s0052g00960.t01 | Wine grape | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole | 31.33 | 55.29 |
| AT2G18860.1 | Thale cress | cytosol | 54.33 | 55.07 |
| KRH02874 | Soybean | cytosol | 45.67 | 41.64 |
| KRG90327 | Soybean | cytosol | 45.0 | 41.03 |
| GSMUA_Achr2P04930_001 | Banana | cytosol | 37.67 | 32.85 |
| GSMUA_AchrUn_... | Banana | cytosol, golgi, nucleus | 38.33 | 31.68 |
| GSMUA_Achr1P10310_001 | Banana | cytosol | 37.67 | 30.38 |
| AT1G27700.1 | Thale cress | cytosol | 29.67 | 29.97 |
| EES14780 | Sorghum | cytosol, golgi, nucleus | 32.67 | 27.45 |
| Zm00001d024418_P004 | Maize | cytosol | 32.67 | 26.56 |
| Os08t0244100-01 | Rice | cytosol, golgi, nucleus | 31.0 | 25.76 |
Protein Annotations
| Gene3D:1.20.58.90 | MapMan:35.2 | EntrezGene:829147 | UniProt:A0A178UUQ1 | ProteinID:AEE85742.1 | EMBL:AF428456 |
| ArrayExpress:AT4G30240 | EnsemblPlantsGene:AT4G30240 | RefSeq:AT4G30240 | TAIR:AT4G30240 | RefSeq:AT4G30240-TAIR-G | EnsemblPlants:AT4G30240.1 |
| TAIR:AT4G30240.1 | EMBL:AY133578 | Unigene:At.26251 | ncoils:Coil | GO:GO:0005575 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016192 | GO:GO:0048193 | RefSeq:NP_567842.1 |
| ProteinID:OAO97345.1 | PFAM:PF09177 | PO:PO:0000293 | PANTHER:PTHR34949 | PANTHER:PTHR34949:SF3 | UniProt:Q944G8 |
| InterPro:SNARE | SUPFAM:SSF47661 | InterPro:Syntaxin-6_N | TMHMM:TMhelix | UniParc:UPI00000A8F37 | SEG:seg |
Description
AT4g30240/F9N11_90 [Source:UniProtKB/TrEMBL;Acc:Q944G8]
Coordinates
chr4:-:14807889..14810075
Molecular Weight (calculated)
34418.6 Da
IEP (calculated)
5.181
GRAVY (calculated)
-0.569
Length
300 amino acids
Sequence
(BLAST)
(BLAST)
001: MMVANSFDLW QKDVFFSAAE EVQESADIME SAYRLWFKEK RDGRVSVESD ELCKELQAAL STAKWQLEEF ERAVSLSHGN CRDDTTLTRH KQFVTAIENQ
101: IYQVESTLLE SLSENGKQPL RWVDLNKEER DDLAMFLSGS SQTSESLNSD SINLRDSSTS SVAENPRGIN GRREGRCYGD SPDCVIDIDD IGSPESADKK
201: GGTRRTWSSP NVPNISALRI NVPVNAKEEE REKFLSHIED TPKEKGAKPM FWLQRCRDYN QLFDRVKVYQ RRFRVPLSRP IKLILSLTLI LILLLFILRT
101: IYQVESTLLE SLSENGKQPL RWVDLNKEER DDLAMFLSGS SQTSESLNSD SINLRDSSTS SVAENPRGIN GRREGRCYGD SPDCVIDIDD IGSPESADKK
201: GGTRRTWSSP NVPNISALRI NVPVNAKEEE REKFLSHIED TPKEKGAKPM FWLQRCRDYN QLFDRVKVYQ RRFRVPLSRP IKLILSLTLI LILLLFILRT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.