Factsheet for VIT_11s0052g00960.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, mitochondrion, cytosol, plasma membrane, golgi

Predictor Summary:

nucleus 2
cytosol 1
golgi 2
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, secretory
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	golgi, nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49304	Canola	cytosol, golgi	54.71	34.19
CDY12994	Canola	cytosol, golgi	54.12	33.45
CDY28171	Canola	cytosol	54.12	32.97
CDY14181	Canola	golgi	53.53	32.38
Bra010294.1-P	Field mustard	golgi	53.53	32.27
KRG90327	Soybean	cytosol	61.18	31.61
AT4G30240.1	Thale cress	cytosol, golgi	55.29	31.33
KRH02874	Soybean	cytosol	60.59	31.31
CDY03541	Canola	cytosol, golgi	51.18	30.96
CDX68636	Canola	cytosol	52.94	30.1
AT2G18860.1	Thale cress	cytosol	51.18	29.39
Bra011176.1-P	Field mustard	cytosol	54.12	27.96
GSMUA_Achr2P04930_001	Banana	cytosol	52.35	25.87
CDY14469	Canola	cytosol, golgi	51.76	24.51
GSMUA_AchrUn_...	Banana	cytosol, golgi, nucleus	51.76	24.24
GSMUA_Achr1P10310_001	Banana	cytosol	50.59	23.12
Bra038827.1-P	Field mustard	cytosol, plasma membrane	54.12	21.9
EES14780	Sorghum	cytosol, golgi, nucleus	45.29	21.57
Zm00001d024418_P004	Maize	cytosol	46.47	21.41
Os08t0244100-01	Rice	cytosol, golgi, nucleus	44.71	21.05
VIT_18s0001g09380.t01	Wine grape	nucleus	40.0	19.71
VIT_08s0007g03310.t01	Wine grape	cytosol	18.82	7.17

Protein Annotations

ArrayExpress:VIT_11s0052g00960	EnsemblPlants:VIT_11s0052g00960.t01	EnsemblPlantsGene:VIT_11s0052g00960	Gene3D:1.20.58.90	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016192	GO:GO:0048193	InterPro:SNARE	InterPro:Syntaxin-6_N
ncoils:Coil	PANTHER:PTHR34949	PANTHER:PTHR34949:SF3	PFAM:PF09177	ProteinID:CBI17832.3	SEG:seg
SUPFAM:SSF47661	UniParc:UPI0001BE1771	UniProt:D7SQA1	MapMan:35.2	:	:

Description

Putative uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:D7SQA1]

Coordinates

chr11:-:18581095..18582408

Molecular Weight (calculated)

16131.5 Da

IEP (calculated)

4.413

GRAVY (calculated)

-0.735

Length

170 amino acids

Sequence
(BLAST)

001: MMVANSFDLW QKDAFFSAAE EVQESADIME SAYRTWVRER REGLTHEDLD ELYRELKTAL GTAKWQLEEF ERAVRLSHRQ RCDDNTTARH RQFIAAIENQ
101: ISHVEEALRE SFNEEGKQPP QWVNLDQEER DDLAXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXPF

Best Arabidopsis Sequence Match ( AT4G30240.1 )
(BLAST)

001: MMVANSFDLW QKDVFFSAAE EVQESADIME SAYRLWFKEK RDGRVSVESD ELCKELQAAL STAKWQLEEF ERAVSLSHGN CRDDTTLTRH KQFVTAIENQ
101: IYQVESTLLE SLSENGKQPL RWVDLNKEER DDLAMFLSGS SQTSESLNSD SINLRDSSTS SVAENPRGIN GRREGRCYGD SPDCVIDIDD IGSPESADKK
201: GGTRRTWSSP NVPNISALRI NVPVNAKEEE REKFLSHIED TPKEKGAKPM FWLQRCRDYN QLFDRVKVYQ RRFRVPLSRP IKLILSLTLI LILLLFILRT

Arabidopsis Description

AT4g30240/F9N11_90 [Source:UniProtKB/TrEMBL;Acc:Q944G8]
SUBAcon: [golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.