Factsheet for VIT_08s0007g03310.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	golgi, nucleus
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES19612	Sorghum	cytosol	23.54	32.31
TraesCS1A01G276400.1	Wheat	cytosol, golgi, nucleus	23.77	31.64
TraesCS1D01G275900.1	Wheat	cytosol, golgi, nucleus	23.77	31.64
GSMUA_AchrUn_...	Banana	nucleus	29.82	31.44
TraesCS1B01G285600.1	Wheat	cytosol, golgi, nucleus	23.54	31.34
Os05t0443700-01	Rice	cytosol	23.32	31.04
Zm00001d038292_P004	Maize	nucleus	23.54	28.69
VIT_11s0052g00960.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	7.17	18.82
VIT_18s0001g09380.t01	Wine grape	nucleus	13.23	17.1
Zm00001d019814_P001	Maize	mitochondrion	13.45	14.25

Protein Annotations

Gene3D:1.20.58.90	EntrezGene:100855344	wikigene:100855344	MapMan:35.2	EMBL:AM433855	ProteinID:CAN62761
ProteinID:CAN62761.1	ProteinID:CCB55433	ProteinID:CCB55433.1	UniProt:F6HKL1	EMBL:FN595991	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	GO:GO:0048193
EntrezGene:LOC100855344	wikigene:LOC100855344	PFAM:PF09177	PANTHER:PTHR34949	PANTHER:PTHR34949:SF2	InterPro:SNARE
SUPFAM:SSF47661	InterPro:Syntaxin-6_N	TMHMM:TMhelix	UniParc:UPI0002107FB0	ArrayExpress:VIT_08s0007g03310	EnsemblPlantsGene:VIT_08s0007g03310
EnsemblPlants:VIT_08s0007g03310.t01	unigene:Vvi.17662	RefSeq:XP_003632646	RefSeq:XP_003632646.1	:	:

Description

No Description!

Coordinates

chr8:-:17292730..17297451

Molecular Weight (calculated)

50950.1 Da

IEP (calculated)

6.795

GRAVY (calculated)

-0.469

Length

446 amino acids

Sequence
(BLAST)

001: MATSFHQWES DPLFSAAEVV QDSADRMESI FRLLLHEQGL VQGHHSDPKL LTSIEYHRRD LATTLETAKW QLEDFERAVS LSAATDKSRM REDVISRHKQ
101: FIRAIREQIV HVEKSLLDSS MGNSVRNTEW INLNEQDRDG LALFLSGQDP TEQVPRYEKE DSTILRRFLD PVTTSSYNDS TDEIVEQKTR ESENLNMARA
201: MHVDHDFKSS KEGKLRNVGS HYPAQLSFEA PEALQDTAGG KHGGDGSWDL EADGAKDKSF FHKDGRGYHN RMGIFCFLAN LWPAYGSRVS RNFTKRLKDG
301: EEQSHSPSQM DVSHGAPGHQ ARMRLAFRYG IFQGLCSQLS AKVTHSYSWI GVWRSRYQRS RYHIQVDHHS VRMILMMLFA LIVLGANEWF IIVSCCFKLL
401: ENSLFIGAFY SLFRSMCFQI YINGGNDDCC PATFPLPGAQ ILHQVV

Best Arabidopsis Sequence Match ( AT4G30240.1 )
(BLAST)

001: MMVANSFDLW QKDVFFSAAE EVQESADIME SAYRLWFKEK RDGRVSVESD ELCKELQAAL STAKWQLEEF ERAVSLSHGN CRDDTTLTRH KQFVTAIENQ
101: IYQVESTLLE SLSENGKQPL RWVDLNKEER DDLAMFLSGS SQTSESLNSD SINLRDSSTS SVAENPRGIN GRREGRCYGD SPDCVIDIDD IGSPESADKK
201: GGTRRTWSSP NVPNISALRI NVPVNAKEEE REKFLSHIED TPKEKGAKPM FWLQRCRDYN QLFDRVKVYQ RRFRVPLSRP IKLILSLTLI LILLLFILRT

Arabidopsis Description

AT4g30240/F9N11_90 [Source:UniProtKB/TrEMBL;Acc:Q944G8]
SUBAcon: [golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.