Subcellular Localization
min:
: max
Winner_takes_all: golgi, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- golgi 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G276400.1 | Wheat | cytosol, golgi, nucleus | 96.72 | 96.72 |
| TraesCS1D01G275900.1 | Wheat | cytosol, golgi, nucleus | 96.12 | 96.12 |
| Os05t0443700-01 | Rice | cytosol | 67.76 | 67.76 |
| EES19612 | Sorghum | cytosol | 60.6 | 62.46 |
| Zm00001d038292_P004 | Maize | nucleus | 67.46 | 61.75 |
| Zm00001d019814_P001 | Maize | mitochondrion | 32.54 | 25.89 |
| GSMUA_AchrUn_... | Banana | nucleus | 31.04 | 24.59 |
| VIT_08s0007g03310.t01 | Wine grape | cytosol | 31.34 | 23.54 |
| TraesCS4B01G255000.1 | Wheat | cytosol | 11.94 | 11.24 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G285600.1 | EnsemblPlantsGene:TraesCS1B01G285600 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016192 | GO:GO:0048193 | InterPro:SNARE | InterPro:Syntaxin-6_N | ncoils:Coil | PANTHER:PTHR34949 |
| PANTHER:PTHR34949:SF2 | PFAM:PF09177 | SEG:seg | SUPFAM:SSF47661 | TMHMM:TMhelix | MapMan:35.2 |
Description
No Description!
Coordinates
chr1B:-:496562942..496567991
Molecular Weight (calculated)
37821.9 Da
IEP (calculated)
6.139
GRAVY (calculated)
-0.660
Length
335 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEGFGRWES DPLFPAAECV QDSADRMDGV YRLLLHEKKV IQDDTSDAKL HAPIQYERDV VTALGTTKWQ LEQFEREVNA AAFSDKSTSR ENAILKFRQF
101: IRAIAEQISE VEESLKTLRT DFSRTPKSPY PSSEQDGDGL ASFLSGGNNH SHAYYSTDTN EITELKLDSA PMVNGYHSAQ EDTSRELRYS GNDVEGASKL
201: QCSRGESASE VDHNGSTLCS LDADDSLGTS HHYKNKLSSQ YRSFMRNLWF TNRDHESFTK RRKDGEVVDS LRNGNILPPF NLRTSGRTMY CWPELIKRTL
301: SRSEYSTRYN HPQLFVATSL LVALAVLGLL VLHAK
101: IRAIAEQISE VEESLKTLRT DFSRTPKSPY PSSEQDGDGL ASFLSGGNNH SHAYYSTDTN EITELKLDSA PMVNGYHSAQ EDTSRELRYS GNDVEGASKL
201: QCSRGESASE VDHNGSTLCS LDADDSLGTS HHYKNKLSSQ YRSFMRNLWF TNRDHESFTK RRKDGEVVDS LRNGNILPPF NLRTSGRTMY CWPELIKRTL
301: SRSEYSTRYN HPQLFVATSL LVALAVLGLL VLHAK
001: MTTSLDRWEK DPFFPAAEEV QESADRMESA YRTWLNGKRD SSKVWDSEQL HRDLHAALGT TKWQLDEFQK AVKSSYDNRL SDETRDRHRE FTFVMEAQVS
101: KIEKSLKEAA QSDGKGTPRW VRLDEDDRNE LALFLTGPSE SAKANPNGHR RTASAAEFSA WNIAVSDDGL VKKSCDEPVV RPPRKVPSFS GFLNYMDPVS
201: KHCNRKWKGL DRQGDSDAAL LPIQANQQDM NGCSERGKSC MECEEDCYEK QLHGWYGALQ RQLQRSQYRM RYSKSVHAAI WIILLVFLIV VVAVHSM
101: KIEKSLKEAA QSDGKGTPRW VRLDEDDRNE LALFLTGPSE SAKANPNGHR RTASAAEFSA WNIAVSDDGL VKKSCDEPVV RPPRKVPSFS GFLNYMDPVS
201: KHCNRKWKGL DRQGDSDAAL LPIQANQQDM NGCSERGKSC MECEEDCYEK QLHGWYGALQ RQLQRSQYRM RYSKSVHAAI WIILLVFLIV VVAVHSM
Arabidopsis Description
At1g27700/T22C5_14 [Source:UniProtKB/TrEMBL;Acc:Q940U5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.