Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES19612 | Sorghum | cytosol | 66.94 | 75.38 |
| Os05t0443700-01 | Rice | cytosol | 64.48 | 70.45 |
| TraesCS1A01G276400.1 | Wheat | cytosol, golgi, nucleus | 61.75 | 67.46 |
| TraesCS1B01G285600.1 | Wheat | cytosol, golgi, nucleus | 61.75 | 67.46 |
| TraesCS1D01G275900.1 | Wheat | cytosol, golgi, nucleus | 61.2 | 66.87 |
| Zm00001d019814_P001 | Maize | mitochondrion | 33.88 | 29.45 |
| GSMUA_AchrUn_... | Banana | nucleus | 27.32 | 23.64 |
| VIT_08s0007g03310.t01 | Wine grape | cytosol | 28.69 | 23.54 |
| Zm00001d024418_P004 | Maize | cytosol | 11.2 | 11.11 |
| Zm00001d028054_P002 | Maize | cytosol | 10.38 | 9.79 |
Protein Annotations
| EnsemblPlants:Zm00001d038292_P004 | EnsemblPlants:Zm00001d038292_T004 | EnsemblPlantsGene:Zm00001d038292 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016192 | GO:GO:0048193 | InterPro:SNARE | InterPro:Syntaxin-6_N |
| ncoils:Coil | PANTHER:PTHR34949 | PANTHER:PTHR34949:SF2 | PFAM:PF09177 | ProteinID:AQK86245.1 | SEG:seg |
| SUPFAM:SSF47661 | TMHMM:TMhelix | UniParc:UPI00084301CF | UniProt:A0A1D6M546 | MapMan:35.2 | : |
Description
Syntaxin/t-SNARE family protein
Coordinates
chr6:-:153563171..153569387
Molecular Weight (calculated)
42119.8 Da
IEP (calculated)
7.851
GRAVY (calculated)
-0.548
Length
366 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEGFGRWES DLLFPAAECV QDSADRMEGV YRLLLHERKV MQDGTSDAKF HAPIQSERDV ITALGTTKWQ LEQFEREVNA AAFSDKSKSR ENAILKFRQF
101: IRAIADQISQ VEENLESLRL GSSRTPKHLY SSEHDGDGLA SFLSGSSKDD HAYHSTGTDE IVELKLDNVP LVNGYHSTQE HTTYEHRNSD KDVEGAGKRK
201: CSCGEGACEG DHNNSNMFVL DVDDSTSRRF FCKNKLSRQY HNFIRNLWFT KRRRDRESFT KRRKDGEDMD SLRNGNMLPS FNLPQSGRVM YFWPEVIKRR
301: LCRSGYFTDH NHSQIRLVTA VLIALAVLFH AVLIVITLVL CHGFWRTIIV SKHFNVVLQC AMPYRW
101: IRAIADQISQ VEENLESLRL GSSRTPKHLY SSEHDGDGLA SFLSGSSKDD HAYHSTGTDE IVELKLDNVP LVNGYHSTQE HTTYEHRNSD KDVEGAGKRK
201: CSCGEGACEG DHNNSNMFVL DVDDSTSRRF FCKNKLSRQY HNFIRNLWFT KRRRDRESFT KRRKDGEDMD SLRNGNMLPS FNLPQSGRVM YFWPEVIKRR
301: LCRSGYFTDH NHSQIRLVTA VLIALAVLFH AVLIVITLVL CHGFWRTIIV SKHFNVVLQC AMPYRW
001: MTTSLDRWEK DPFFPAAEEV QESADRMESA YRTWLNGKRD SSKVWDSEQL HRDLHAALGT TKWQLDEFQK AVKSSYDNRL SDETRDRHRE FTFVMEAQVS
101: KIEKSLKEAA QSDGKGTPRW VRLDEDDRNE LALFLTGPSE SAKANPNGHR RTASAAEFSA WNIAVSDDGL VKKSCDEPVV RPPRKVPSFS GFLNYMDPVS
201: KHCNRKWKGL DRQGDSDAAL LPIQANQQDM NGCSERGKSC MECEEDCYEK QLHGWYGALQ RQLQRSQYRM RYSKSVHAAI WIILLVFLIV VVAVHSM
101: KIEKSLKEAA QSDGKGTPRW VRLDEDDRNE LALFLTGPSE SAKANPNGHR RTASAAEFSA WNIAVSDDGL VKKSCDEPVV RPPRKVPSFS GFLNYMDPVS
201: KHCNRKWKGL DRQGDSDAAL LPIQANQQDM NGCSERGKSC MECEEDCYEK QLHGWYGALQ RQLQRSQYRM RYSKSVHAAI WIILLVFLIV VVAVHSM
Arabidopsis Description
At1g27700/T22C5_14 [Source:UniProtKB/TrEMBL;Acc:Q940U5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.