Factsheet for Zm00001d024418_P004

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES14780	Sorghum	cytosol, golgi, nucleus	76.15	78.71
Os08t0244100-01	Rice	cytosol, golgi, nucleus	60.43	61.77
VIT_11s0052g00960.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	21.41	46.47
GSMUA_Achr2P04930_001	Banana	cytosol	37.13	39.83
GSMUA_AchrUn_...	Banana	cytosol, golgi, nucleus	36.59	37.19
CDY49304	Canola	cytosol, golgi	27.1	36.76
CDY12994	Canola	cytosol, golgi	26.56	35.64
GSMUA_Achr1P10310_001	Banana	cytosol	35.5	35.22
CDY14181	Canola	golgi	25.75	33.81
Bra010294.1-P	Field mustard	golgi	25.75	33.69
CDY03541	Canola	cytosol, golgi	24.93	32.74
AT4G30240.1	Thale cress	cytosol, golgi	26.56	32.67
CDY28171	Canola	cytosol	24.66	32.62
KRH02874	Soybean	cytosol	27.91	31.31
AT2G18860.1	Thale cress	cytosol	24.93	31.08
KRG90327	Soybean	cytosol	27.1	30.4
CDX68636	Canola	cytosol	23.58	29.1
Zm00001d028054_P002	Maize	cytosol	30.08	28.61
Bra011176.1-P	Field mustard	cytosol	24.66	27.66
CDY14469	Canola	cytosol, golgi	24.66	25.35
Bra038827.1-P	Field mustard	cytosol, plasma membrane	27.91	24.52
Zm00001d038292_P004	Maize	nucleus	11.11	11.2
Zm00001d019814_P001	Maize	mitochondrion	9.21	8.08

Protein Annotations

EnsemblPlants:Zm00001d024418_P004	EnsemblPlants:Zm00001d024418_T004	EnsemblPlantsGene:Zm00001d024418	EntrezGene:100272494	Gene3D:1.20.58.90	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	GO:GO:0048193
InterPro:SNARE	InterPro:Syntaxin-6_N	PANTHER:PTHR19957	PANTHER:PTHR19957:SF118	PFAM:PF09177	ProteinID:AQK41155.1
SUPFAM:SSF47661	TMHMM:TMhelix	UniParc:UPI0002210139	UniProt:K7TQD4	MapMan:35.2	:

Description

Syntaxin/t-SNARE family protein

Coordinates

chr10:-:70186184..70189716

Molecular Weight (calculated)

41888.2 Da

IEP (calculated)

5.386

GRAVY (calculated)

-0.630

Length

369 amino acids

Sequence
(BLAST)

001: MAASGGLEQW QKDGFFQAAE EVQESADLME SVYRTWMRER SNGSGSEEVD DLQRELQTAL GTAKWQLEQF ERAVSSSNDK YSLEEGTVAR RRQFVVAIED
101: QISRVEKEIN GSLMDNGGQG LNWVKLDDEE RDDLVAFLSA PAEFYSEMKS TDISDRVLSR QKNVPVGRND QSDPPLIIKD IYEVARTEIS TVKSDVCGLA
201: EELHGLRRNL SSGNDHWKID IGNKMDDDRK LSTGVQAASQ TTPSSSIRRS AESITRVRWF WNSLWKSKRD EQRPLRYDMS YNLDLRVVSL LTQRFNGLAE
301: RSRNYLTSWK ENSRTSGRTG GLHIQGQQQN IQFGRSIRIT LLLVLSIFLI GQCPTCLVLN CGKSDKLLT

Best Arabidopsis Sequence Match ( AT4G30240.1 )
(BLAST)

001: MMVANSFDLW QKDVFFSAAE EVQESADIME SAYRLWFKEK RDGRVSVESD ELCKELQAAL STAKWQLEEF ERAVSLSHGN CRDDTTLTRH KQFVTAIENQ
101: IYQVESTLLE SLSENGKQPL RWVDLNKEER DDLAMFLSGS SQTSESLNSD SINLRDSSTS SVAENPRGIN GRREGRCYGD SPDCVIDIDD IGSPESADKK
201: GGTRRTWSSP NVPNISALRI NVPVNAKEEE REKFLSHIED TPKEKGAKPM FWLQRCRDYN QLFDRVKVYQ RRFRVPLSRP IKLILSLTLI LILLLFILRT

Arabidopsis Description

AT4g30240/F9N11_90 [Source:UniProtKB/TrEMBL;Acc:Q944G8]
SUBAcon: [golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.