Factsheet for PGSC0003DMT400080577

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane

Predictor Summary:

nucleus 1
mitochondrion 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plasma membrane
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	mitochondrion
Plant-mPloc:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400011859
PGSC0003DMT400030171
PGSC0003DMT400055415

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31260.1	PGSC0003DMT400011859	AT1G16790.1	21798944
AT2G31260.1	PGSC0003DMT400030171	AT1G27700.1	21798944
AT2G31260.1	PGSC0003DMT400055415	AT1G27700.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g008630.2.1	Tomato	plasma membrane	97.47	94.1
CDY10782	Canola	plasma membrane	41.47	66.42
KRH32171	Soybean	golgi, mitochondrion, nucleus, plasma membrane	66.01	66.4
KRH19544	Soybean	mitochondrion, plasma membrane	66.36	66.36
KRH67361	Soybean	mitochondrion	65.44	65.14
KRG95650	Soybean	plasma membrane	64.52	64.44
AT2G31260.1	Thale cress	plasma membrane	62.67	62.82
Bra021714.1-P	Field mustard	plasma membrane	61.87	62.66
VIT_07s0005g03100.t01	Wine grape	mitochondrion, plasma membrane	66.36	62.61
GSMUA_Achr10P...	Banana	mitochondrion	38.71	62.45
CDY15410	Canola	mitochondrion, plasma membrane	62.21	59.41
CDY24745	Canola	extracellular, plasma membrane	17.97	57.14
CDY19070	Canola	plasma membrane	60.25	52.67
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular	9.56	52.2
TraesCS4A01G079800.1	Wheat	plasma membrane	51.27	50.28
TraesCS4D01G224800.1	Wheat	plasma membrane	51.15	50.06
TraesCS4B01G224200.1	Wheat	plasma membrane	51.15	49.66
Os03t0248000-02	Rice	plasma membrane	51.5	49.56
HORVU0Hr1G008860.2	Barley	plasma membrane	51.04	49.55
OQU92911	Sorghum	plasma membrane	50.46	49.32
GSMUA_Achr1P03240_001	Banana	mitochondrion	53.34	49.1
Os10t0163100-01	Rice	mitochondrion, plasma membrane	50.92	47.68
Zm00001d028417_P001	Maize	plasma membrane	50.12	47.39
KXG38175	Sorghum	mitochondrion	49.31	46.17

Protein Annotations

EntrezGene:102586846	MapMan:19.3.2.1.1	InterPro:Autophagy-rel_prot_9	ncoils:Coil	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0006810	GO:GO:0006914	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009605	GO:GO:0009607	GO:GO:0009987
GO:GO:0015031	GO:GO:0016020	GO:GO:0016021	GO:GO:0030659	GO:GO:0031410	GO:GO:0050832
UniProt:M1D3P6	PFAM:PF04109	EnsemblPlantsGene:PGSC0003DMG400031378	PGSC:PGSC0003DMG400031378	EnsemblPlants:PGSC0003DMT400080577	PANTHER:PTHR13038
PANTHER:PTHR13038:SF16	TMHMM:TMhelix	UniParc:UPI000296741E	RefSeq:XP_006355001.1	RefSeq:XP_006355002.1	SEG:seg

Description

Autophagy protein 9 [Source:PGSC_GENE;Acc:PGSC0003DMG400031378]

Coordinates

chr4:-:3642893..3651848

Molecular Weight (calculated)

100133.0 Da

IEP (calculated)

6.895

GRAVY (calculated)

-0.210

Length

868 amino acids

Sequence
(BLAST)

001: MMFSGQKGAN GLNIFKWRRH GESSLRIGLL DDVHPEIELS DYRRAPSPGS ESPSGLLNGE SVSVEPISDL DLFFERLYNY YCEKGLWCII IKWIFELLSL
101: AFTIFFSGFF LLYVDWNGLR NAKCGMDAVE SGIKPCDLAN EALHLHPLKP LTLFKGTVLG YLGIFSVYWI FCFLRFFAQL RETLAVRQFY CRSLHVTDKE
201: IQTIPWASIL ERVVQLQELQ QLCVVKNLSI HDVVMRLMRK ENYLIGMLNK GLLSLPISHW VPGAGPTISC GPNDVRSRLI LPKTLEWTLN WCILQSMFDR
301: NFCIRRDFIS DPKTLKKRLM IVGVLMLLLS PFLVIFMLVY LFLRHAEQFY NHPSTASSRR WSNLSKWLFR EFNEVDHLFK HRINSSAIHA SDYLKQFPSP
401: ILSIVAKFIS FVSGGFAAVL IIIAFLEESL LEGHIFGRNL FWYAAVFGTI TAISRAAITD ELLVLDPQGA MSLVVQHTHF MPKRWRGKEN TEAVRTEFET
501: LFQYTGMMLL EEMTSIFLTP YLLLFVVPKK VDDILRFIAD FTVHVEGVGH VCSFSVFDFQ NHGNSKYGSP FSSPRLQRSS QGKMEKSFLS FQTSYPSWQP
601: DDHGKQFIST LKTFREQKLQ LHEIGPAYRP SELQHWNPDF RGLSNRNNLF SREMPLNNLG AGFGSMWLID GGQRNYPYIL DWYYTSHPHN TSSDSRGIES
701: RPLHTDNSEH LKDPWMPPHF VQSKDTVDDN WGHLFEDRAQ SHLGATTSAP VLRESILHQD DSSSMAQSMR SQWWTRSRPQ VTNPQTSFLE PPNFNSNPHD
801: YYDNFSDRSL DEQEQELEHT HVDLRNSNRL ANTFFMDDSV GDFNLPFDDI YRLPSGNPTR KLDPSDLV

Best Arabidopsis Sequence Match ( AT2G31260.1 )
(BLAST)

001: MMSSGHKGPN VRNFFKWQRG ESSSSLTTGL LHNESHEIEL SNYGGIPSPG SESPSGLLNG ESLNVQPIAD LDLFVERLYS YYRDKGLWCI IVKWAVELLS
101: LGFIICFSGF FLLYVDWNGL QNAKCGMDAV ESGTKPCDLV KEAIHPHPLS PFTLTTAIIV GYLALFSVYW LFCFLRFFAQ LKDTLDFRHF YYNNLHVTDN
201: EILTMPWATV LEKVVQLQSS QCLCVVKDLS AHDMVMRLMR KENYLIGMLN KGLLSFPISH WIPGAGPAVK SAPDGTQYHL VLTKTLEWTL NWCILQSMFD
301: CNFRVRRDFV SNPTTLKKRL FVVGLAMLLL SPFLVIFMLV YLFLRHAEQF YNHPSTASSR RWSNLSKWLF REFNEVDHLF KHRINSSVVH ASEYLKQFPS
401: PIISIIAKFV SFVSGGFAAV LIIIAFLEES LLEGHIFGRN LFWYAAVFGT ITAISRAAIS DELLVLDPVG TMSLVVQNTH YMPKRWRGKE NKDDVRLELE
501: TLFQYTGMML LEEIASIFIT PFLLMFVVPK RVDDILQFIK DFTVDIEGVG HVCSFSAFYF ENHGNIKYGS PHNATRREQR SSQGKMEKSF LSFQSSYPSW
601: ESDSLGKQFL SNLRTFRDRK LHEINTRHSS PSRAWRESTN TPALYRDIPR NPLASGNHTD SMWLIDPDQR NHPYLLDWYY TSQAHNRTDH PIERANEILT
701: ANQNATDCWP PDLGIRGEDS RDLLNMEAST SGQFFRESIL RHDQPEGEDS YGSQHPLDGR NQWWGRGNHS QISTAHPATT NSFIEPPDFI NRYTAGNLLD
801: NSWSRRSIEE EDEEEEELDW EENARRNLSR TTFMDDNDIE AGIDLHFDDV YSSRPQETST SSTTLR

Arabidopsis Description

ATG9Autophagy-related protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q8RUS5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.