Factsheet for TraesCS2A01G105500.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

mitochondrion 2
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 4
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	mitochondrion, secretory
iPSORT:	mitochondrion
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G105100.1	Wheat	plasma membrane	97.97	98.58
TraesCS2B01G122400.1	Wheat	golgi	97.34	97.5
Os07t0680000-01	Rice	plasma membrane	81.72	83.55
EER99915	Sorghum	plasma membrane	80.62	81.13
Zm00001d022439_P001	Maize	extracellular, plasma membrane, vacuole	79.22	80.09
HORVU2Hr1G017770.3	Barley	plastid	95.47	73.35
GSMUA_Achr11P...	Banana	extracellular, golgi, plasma membrane	70.78	72.95
TraesCS4A01G193900.1	Wheat	extracellular	71.09	72.68
GSMUA_Achr7P22040_001	Banana	extracellular, plasma membrane	70.47	72.51
TraesCS5A01G146800.2	Wheat	golgi	70.78	71.34
TraesCS4A01G135100.3	Wheat	plasma membrane	74.22	71.32
GSMUA_AchrUn_...	Banana	extracellular, golgi, plasma membrane	58.44	70.7
TraesCS1A01G134600.2	Wheat	extracellular, plasma membrane, vacuole	61.88	62.07
TraesCS7A01G483700.1	Wheat	golgi, plasma membrane	55.62	56.78
TraesCS7A01G281400.1	Wheat	cytosol, nucleus, plastid	8.75	56.57
TraesCS5A01G050500.1	Wheat	extracellular, mitochondrion	44.69	55.53
TraesCS2A01G425800.2	Wheat	mitochondrion	55.31	55.23
TraesCS5A01G050400.2	Wheat	extracellular, plasma membrane	43.28	54.96
TraesCS4A01G252300.1	Wheat	extracellular, mitochondrion	10.16	44.83
TraesCS6A01G310600.1	Wheat	cytosol	24.38	41.16
TraesCS7A01G436000.1	Wheat	mitochondrion	12.5	37.91

Protein Annotations

EnsemblPlants:TraesCS2A01G105500.1	EnsemblPlantsGene:TraesCS2A01G105500	Gene3D:2.10.25.10	Gene3D:3.40.30.10	Gene3D:3.50.30.30	GO:GO:0003674
GO:GO:0005488	GO:GO:0005509	InterPro:EGF_Ca-bd_CS	InterPro:PA_domain	PANTHER:PTHR22765	PANTHER:PTHR22765:SF57
PFAM:PF02225	ScanProsite:PS01187	SEG:seg	SignalP:SignalP-TM	SUPFAM:SSF52025	TIGR:cd00054
TIGR:cd02125	TMHMM:TMhelix	MapMan:22.5.2.1	:	:	:

Description

No Description!

Coordinates

chr2A:+:58001557..58005555

Molecular Weight (calculated)

71084.3 Da

IEP (calculated)

5.914

GRAVY (calculated)

-0.323

Length

640 amino acids

Sequence
(BLAST)

001: MGGRSPPAGW RRWVRTRLLL LLLVVLALAA TAAVEGRFVV EKNSLRVTSP AALRGVYECA IGNFGMPQYG GTMHGVVVYP KANTKACKPF ADFGLSFNPK
101: AGGLPVFLLV DRGDCYFTTK GWNAQTAGAA AVLVADDRAE PLITMDTPES SGKEHLENIT VPSALVSKRF GDDLKGALEN GDMVNVLLDW RESLPHPDER
201: VEYEFWTNSN DECGAKCDMQ MSFVRDFRGV AQVLEQRGYT QFAPHYITWY CPEAFVLSAQ CRSQCVNHGR YCAPDPEQDF TTGYDGKDVV VQNLIQICLF
301: KVANESRKPW LWWDYVHDFA IRCPMKEKKY TTDCAHGVIK SLGMDIDKIT QCVGDPDADE DNPVLKAEQD AQIGHGARGD VTILPTFVVN NRQYRGKLDK
401: RAVLRAICSG FEETTEPDIC LTQDIQTNQC LENNGGCWLD KNTNFTACKD TFRGRVCECP VVNGVKFVGD GYTHCEASGV GRCQINNGGC WKETRNGKSV
501: SACSNEQAKG CKCPQGFKGD GIHGCEDVDE CKERLFCQCK DCSCENTWGS YECGCGGSNM LYMREHDTCI SKVATSSLGW GFMWVIFFGL GFAGVGAYAV
601: YKYRLRSYMD SEIRAIMAQY MPLENQETSS HQRHVEHADI

Best Arabidopsis Sequence Match ( AT2G14720.1 )
(BLAST)

001: MKQLLCYLPW LLLLSLVVSP FNEARFVVEK NSLSVTSPES IKGTHDSAIG NFGIPQYGGS MAGTVVYPKE NQKSCKEFSD FSISFKSQPG ALPTFLLVDR
101: GDCFFALKVW NAQKAGASAV LVADNVDEPL ITMDTPEEDV SSAKYIENIT IPSALVTKGF GEKLKKAISG GDMVNLNLDW REAVPHPDDR VEYELWTNSN
201: DECGVKCDML MEFVKDFKGA AQILEKGGFT QFRPHYITWY CPHAFTLSRQ CKSQCINKGR YCAPDPEQDF SSGYDGKDVV VENLRQLCVY KVANETGKPW
301: VWWDYVTDFQ IRCPMKEKKY NKDCAESVIK SLGIDSRKID KCMGDPDADL DNPVLKEEQD AQVGKGTRGD VTILPTLVVN NRQYRGKLEK SAVLKALCSG
401: FEESTEPAIC LSTDMETNEC LDNNGGCWQD KSANITACKD TFRGKVCVCP IVDGVRFKGD GYSHCEPSGP GRCTINNGGC WHEERDGHAF SACVDKDSVK
501: CECPPGFKGD GVKKCEDINE CKEKKACQCP ECSCKNTWGS YECSCSGDLL YMRDHDTCIS KTGSQVKSAW AAVWLIMLSL GLAAAGAYLV YKYRLRQYMD
601: SEIRAIMAQY MPLDSQPEVP NHTNDERA

Arabidopsis Description

VSR4Vacuolar-sorting receptor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q56ZQ3]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.