Factsheet for TraesCS5A01G146800.2

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 6
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G145700.1	Wheat	golgi	97.95	98.89
TraesCS5D01G145500.1	Wheat	plasma membrane	96.22	98.55
HORVU5Hr1G046490.2	Barley	cytosol	84.41	95.2
Os11t0116550-01	Rice	extracellular, plasma membrane, vacuole	87.4	88.66
EES09132	Sorghum	plasma membrane	86.61	87.72
Zm00001d052354_P005	Maize	plasma membrane	85.83	87.48
TraesCS4A01G193900.1	Wheat	extracellular	85.83	87.06
Zm00001d005062_P003	Maize	plasma membrane	85.35	86.86
GSMUA_Achr11P...	Banana	extracellular, golgi, plasma membrane	79.53	81.32
GSMUA_Achr7P22040_001	Banana	extracellular, plasma membrane	78.58	80.23
GSMUA_AchrUn_...	Banana	extracellular, golgi, plasma membrane	63.46	76.18
Os12t0116000-01	Rice	plastid	87.24	76.1
TraesCS2A01G105500.1	Wheat	golgi	71.34	70.78
TraesCS4A01G135100.3	Wheat	plasma membrane	72.6	69.22
TraesCS1A01G134600.2	Wheat	extracellular, plasma membrane, vacuole	65.98	65.67
TraesCS7A01G281400.1	Wheat	cytosol, nucleus, plastid	9.29	59.6
TraesCS5A01G050500.1	Wheat	extracellular, mitochondrion	48.03	59.22
TraesCS5A01G050400.2	Wheat	extracellular, plasma membrane	46.77	58.93
TraesCS7A01G483700.1	Wheat	golgi, plasma membrane	56.85	57.58
TraesCS2A01G425800.2	Wheat	mitochondrion	57.17	56.63
TraesCS4A01G252300.1	Wheat	extracellular, mitochondrion	9.92	43.45
TraesCS6A01G310600.1	Wheat	cytosol	25.35	42.48
TraesCS7A01G436000.1	Wheat	mitochondrion	13.07	39.34

Protein Annotations

EnsemblPlants:TraesCS5A01G146800.2	EnsemblPlantsGene:TraesCS5A01G146800	Gene3D:2.10.25.10	Gene3D:3.40.30.10	Gene3D:3.50.30.30	GO:GO:0003674
GO:GO:0005488	GO:GO:0005509	InterPro:EGF-like_Ca-bd_dom	InterPro:EGF_Ca-bd_CS	InterPro:PA_domain	PANTHER:PTHR22765
PANTHER:PTHR22765:SF47	PFAM:PF02225	ScanProsite:PS01187	SEG:seg	SignalP:SignalP-noTM	SMART:SM00179
SUPFAM:SSF52025	TIGR:cd00054	TIGR:cd02125	TMHMM:TMhelix	MapMan:22.5.2.1	:

Description

No Description!

Coordinates

chr5A:+:324070477..324074169

Molecular Weight (calculated)

70536.9 Da

IEP (calculated)

6.801

GRAVY (calculated)

-0.399

Length

635 amino acids

Sequence
(BLAST)

001: MRLRSAPPAT PRLLLLLAVL LYGFCCCCEG RFVVEKNSLK VTAPDSLKGS YECAIGNFGV PQYGGTMVGV VAYPKSNRKA CKSFDDFDIS YKAKSGSLPT
101: FLLVDRGDCF FTKKAWNAQN AGVAAILVAD DKDEPLITMD TPEESGRADY LENITIPSAL ITKSFGDRLR KAVDGGHMVN VNLDWRESLP HPDERVEYEF
201: WTNSNDECGP KCDSQIDFVK SFKGPAQILE KKGYTQFTPH YITWYCPEAF TLSKQCKSQC INHGRYCAPD PEQDFSKGYD GKDVVVQNLR QVCVYKVAKE
301: NKKPWLWWDY VTDFAIRCPM KEKKYTKECA DGVIKSLGLD HKAIDKCIGD PNADEENHVL KAEQDAQIGK GARGDVTILP TLVINNRQYR GKLDKGAVLK
401: ALCAGFQETT EPAVCLSEDI QTNECLENNG GCWHDKAANI SACKDTFRGR VCECPVVKGV KFVGDGYTHC EASGSGRCEI NNGGCWKETR NGLTHSACTD
501: GGCKCPVGFK GDGVHKCEDV DECKERTACQ CKECKCKNTW GSYECGCGGG LLYMKEHDTC IINTFYSGKD AGARVGWNFL WFLLFGLAAV GIAGYAVYKY
601: RIRSYMDSEI RAIMAQYMPL DNQGEIPNHS HHIEM

Best Arabidopsis Sequence Match ( AT3G52850.1 )
(BLAST)

001: MKLGLFTLSF LLILNLAMGR FVVEKNNLKV TSPDSIKGIY ECAIGNFGVP QYGGTLVGTV VYPKSNQKAC KSYSDFDISF KSKPGRLPTF VLIDRGDCYF
101: TLKAWIAQQA GAAAILVADS KAEPLITMDT PEEDKSDADY LQNITIPSAL ITKTLGDSIK SALSGGDMVN MKLDWTESVP HPDERVEYEL WTNSNDECGK
201: KCDTQIEFLK NFKGAAQILE KGGHTQFTPH YITWYCPEAF TLSKQCKSQC INHGRYCAPD PEQDFTKGYD GKDVVVQNLR QACVYRVMND TGKPWVWWDY
301: VTDFAIRCPM KEKKYTKECA DGIIKSLGID LKKVDKCIGD PEADVENPVL KAEQESQIGK GSRGDVTILP TLVVNNRQYR GKLEKGAVLK AMCSGFQEST
401: EPAICLTEDL ETNECLENNG GCWQDKAANI TACRDTFRGR LCECPTVQGV KFVGDGYTHC KASGALHCGI NNGGCWRESR GGFTYSACVD DHSKDCKCPL
501: GFKGDGVKNC EDVDECKEKT VCQCPECKCK NTWGSYECSC SNGLLYMREH DTCIGSGKVG TTKLSWSFLW ILIIGVGVAG LSGYAVYKYR IRSYMDAEIR
601: GIMAQYMPLE SQPPNTSGHH MDI

Arabidopsis Description

VSR1Vacuolar-sorting receptor 1 [Source:UniProtKB/Swiss-Prot;Acc:P93026]
SUBAcon: [plasma membrane,golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.