Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular
Predictor Summary:
Predictor Summary:
- plastid 2
- plasma membrane 3
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- golgi 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G050500.1 | Wheat | extracellular, mitochondrion | 75.99 | 74.37 |
| TraesCS4A01G252300.1 | Wheat | extracellular, mitochondrion | 18.45 | 64.14 |
| GSMUA_AchrUn_... | Banana | extracellular, golgi, plasma membrane | 55.36 | 52.74 |
| TraesCS7A01G281400.1 | Wheat | cytosol, nucleus, plastid | 9.92 | 50.51 |
| TraesCS4A01G193900.1 | Wheat | extracellular | 58.53 | 47.12 |
| GSMUA_Achr11P... | Banana | extracellular, golgi, plasma membrane | 57.74 | 46.86 |
| TraesCS5A01G146800.2 | Wheat | golgi | 58.93 | 46.77 |
| GSMUA_Achr7P22040_001 | Banana | extracellular, plasma membrane | 56.94 | 46.14 |
| TraesCS2A01G105500.1 | Wheat | golgi | 54.96 | 43.28 |
| TraesCS4A01G135100.3 | Wheat | plasma membrane | 54.76 | 41.44 |
| TraesCS1A01G134600.2 | Wheat | extracellular, plasma membrane, vacuole | 51.39 | 40.6 |
| TraesCS7A01G483700.1 | Wheat | golgi, plasma membrane | 47.22 | 37.96 |
| TraesCS2A01G425800.2 | Wheat | mitochondrion | 45.24 | 35.57 |
| TraesCS6A01G310600.1 | Wheat | cytosol | 24.6 | 32.72 |
| TraesCS7A01G436000.1 | Wheat | mitochondrion | 12.5 | 29.86 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G050400.2 | EnsemblPlantsGene:TraesCS5A01G050400 | Gene3D:3.50.30.30 | InterPro:PA_domain | PANTHER:PTHR22765 | PANTHER:PTHR22765:SF47 |
| PFAM:PF02225 | SignalP:SignalP-noTM | SUPFAM:SSF52025 | MapMan:22.5.2.1 | : | : |
Description
No Description!
Coordinates
chr5A:-:46003922..46009943
Molecular Weight (calculated)
56598.1 Da
IEP (calculated)
6.988
GRAVY (calculated)
-0.423
Length
504 amino acids
Sequence
(BLAST)
(BLAST)
001: MLRLLIIWAA ILGCCHGQSE VSRRNSRLRV MSPPELEGTY GCASTDFGFP QHGGSMTGVV VYPRRNTMAC TSFDDFGISL RSRPAGALPV ILLVDRGECY
101: YTTKVRNGQK AGAAAVLLVD QITQPLFTVD KSESSQATND LQDVTIPSAL ITRSLGNSLK KAIDNVDLVN VSFNWGESRL YPDERAEYEF WTNSNDECGP
201: KCDSQVDFLK RFKGVAQTLE KKGYTQFTPH YITWHCPESY QNSKMCRSQC INYGRYCAPD PEQHRYDGCD VVVQKLHQLC VFKVAKRTGK PWLWWDYVTH
301: FAIRCSMKEM NYSKRCADRV IESLGLNQKE VDMCVGDPSA DEENPALKAE QDTQIGKGSH SDITMLPTLV INNRQYRGKL EKGAVLRALC TSFQENNKPS
401: VCSNEEEDIQ TNQCLDNNGG CWQDMAANVT ACKDTSTGTV CECPVLQGVK YIGDGYNDCK APMYQDWQPI KIRNTHTYSS YLTEVVHKAI YNLFAGIFAA
501: HKVF
101: YTTKVRNGQK AGAAAVLLVD QITQPLFTVD KSESSQATND LQDVTIPSAL ITRSLGNSLK KAIDNVDLVN VSFNWGESRL YPDERAEYEF WTNSNDECGP
201: KCDSQVDFLK RFKGVAQTLE KKGYTQFTPH YITWHCPESY QNSKMCRSQC INYGRYCAPD PEQHRYDGCD VVVQKLHQLC VFKVAKRTGK PWLWWDYVTH
301: FAIRCSMKEM NYSKRCADRV IESLGLNQKE VDMCVGDPSA DEENPALKAE QDTQIGKGSH SDITMLPTLV INNRQYRGKL EKGAVLRALC TSFQENNKPS
401: VCSNEEEDIQ TNQCLDNNGG CWQDMAANVT ACKDTSTGTV CECPVLQGVK YIGDGYNDCK APMYQDWQPI KIRNTHTYSS YLTEVVHKAI YNLFAGIFAA
501: HKVF
001: MKQLLCYLPW LLLLTLLVSP LNDARFVVEK NSLSVTSPES IKGTHDSAIG NFGIPQYGGS MAGTVVYPKE NQKSCKEFSD FSISFKSQPG ALPTFLLVDR
101: GDCFFALKVW NAQKAGASAV LVADNVDEPL ITMDTPEEDV SSAKYIENIT IPSALVTKGF GEKLKKAISG GDMVNLNLDW REAVPHPDDR VEYELWTNSN
201: DECGVKCDML MEFVKDFKGA AQILEKGGFT QFRPHYITWY CPHAFTLSRQ CKSQCINKGR YCAPDPEQDF SSGYDGKDVV VENLRQLCVY KVANETGKPW
301: VWWDYVTDFQ IRCPMKEKKY NKECADSVIK SLGIDSKKLD KCMGDPDADL DNPVLKEEQD AQVGKGSRGD VTILPTLVVN NRQYRGKLEK SAVLKALCSG
401: FEETTEPAIC LSTDVESNEC LDNNGGCWQD KSANITACKD TFRGRVCECP TVDGVQFKGD GYSHCEPSGP GRCTINNGGC WHEERDGHAF SACVDKDSVK
501: CECPPGFKGD GTKKCEDINE CKEKKACQCP ECSCKNTWGS YECSCSGDLL YIRDHDTCIS KTGAQVRSAW AAVWLIMLSL GLAAAGAYLV YKYRLRQYMD
601: SEIRAIMAQY MPLDSQPEIP NHVNDERA
101: GDCFFALKVW NAQKAGASAV LVADNVDEPL ITMDTPEEDV SSAKYIENIT IPSALVTKGF GEKLKKAISG GDMVNLNLDW REAVPHPDDR VEYELWTNSN
201: DECGVKCDML MEFVKDFKGA AQILEKGGFT QFRPHYITWY CPHAFTLSRQ CKSQCINKGR YCAPDPEQDF SSGYDGKDVV VENLRQLCVY KVANETGKPW
301: VWWDYVTDFQ IRCPMKEKKY NKECADSVIK SLGIDSKKLD KCMGDPDADL DNPVLKEEQD AQVGKGSRGD VTILPTLVVN NRQYRGKLEK SAVLKALCSG
401: FEETTEPAIC LSTDVESNEC LDNNGGCWQD KSANITACKD TFRGRVCECP TVDGVQFKGD GYSHCEPSGP GRCTINNGGC WHEERDGHAF SACVDKDSVK
501: CECPPGFKGD GTKKCEDINE CKEKKACQCP ECSCKNTWGS YECSCSGDLL YIRDHDTCIS KTGAQVRSAW AAVWLIMLSL GLAAAGAYLV YKYRLRQYMD
601: SEIRAIMAQY MPLDSQPEIP NHVNDERA
Arabidopsis Description
VSR3VSR3 [Source:UniProtKB/TrEMBL;Acc:A0A178VT51]
SUBAcon: [plasma membrane,extracellular,vacuole]
SUBAcon: [plasma membrane,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.