Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 4
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G061200.2 | Wheat | extracellular | 88.51 | 80.46 |
| TraesCS5A01G050500.1 | Wheat | extracellular, mitochondrion | 78.72 | 71.84 |
| GSMUA_AchrUn_... | Banana | extracellular, golgi, plasma membrane | 62.34 | 55.39 |
| TraesCS5B01G145700.1 | Wheat | golgi | 65.96 | 49.28 |
| TraesCS4B01G121300.2 | Wheat | extracellular | 65.32 | 49.12 |
| GSMUA_Achr11P... | Banana | extracellular, golgi, plasma membrane | 64.26 | 48.63 |
| GSMUA_Achr7P22040_001 | Banana | extracellular, plasma membrane | 64.04 | 48.39 |
| TraesCS2B01G122400.1 | Wheat | golgi | 62.13 | 45.7 |
| TraesCS4B01G170000.1 | Wheat | plasma membrane | 60.64 | 45.67 |
| TraesCS1B01G148200.1 | Wheat | plasma membrane | 57.23 | 42.56 |
| TraesCS7B01G387100.1 | Wheat | extracellular, plasma membrane | 51.49 | 38.41 |
| TraesCS2B01G446100.1 | Wheat | plasma membrane | 49.57 | 36.29 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G056400.1 | EnsemblPlantsGene:TraesCS5B01G056400 | Gene3D:3.40.30.10 | Gene3D:3.50.30.30 | InterPro:PA_domain | PANTHER:PTHR22765 |
| PANTHER:PTHR22765:SF47 | PFAM:PF02225 | SignalP:SignalP-noTM | SUPFAM:SSF52025 | MapMan:22.5.2.1 | : |
Description
No Description!
Coordinates
chr5B:-:62943191..62952303
Molecular Weight (calculated)
52582.3 Da
IEP (calculated)
5.689
GRAVY (calculated)
-0.420
Length
470 amino acids
Sequence
(BLAST)
(BLAST)
001: MLRLLIIWAA ILGCCHGQSE VSRRNSLLRV MSPPELEGTY GCASADFGFP QHAGSMTGVV VYPRRNKMAC MNFDDFGISF RLRRAGGPPV FLLVDRGDCF
101: FTTKVRNGQK AGAAAVLIVN DRNEPLFAID EPESGETTLN LHLQDITIPS ALITKSLGES LRKASNNGDL VDVNLDWEES RPYPHERAEY EFWTNGNDEC
201: GPKCDEQVDF LKRFKGVAQI LEKKGYTQFT PHYTTWYCPE SFMFSKQCRS QCINYGRYCA PNPEQDFGKG YDGSDVVVQN LYQICVFKVA KETGKPWLWW
301: DYVTHFAIRC SMKEKNYNEK CAHRVIKSLG LNQKAVDMCV GDPNADEENP VLKAEQDAQI GKDSGNHVTI LPTLVINNRQ YRGKLEKAAV LKALCASFRE
401: NNEPSVCLNE EEDIQTNQCL NNNGGCWQDM AANVTACKDT SVGTVCECPV LQGVKYIGDG YNHCEANIGN
101: FTTKVRNGQK AGAAAVLIVN DRNEPLFAID EPESGETTLN LHLQDITIPS ALITKSLGES LRKASNNGDL VDVNLDWEES RPYPHERAEY EFWTNGNDEC
201: GPKCDEQVDF LKRFKGVAQI LEKKGYTQFT PHYTTWYCPE SFMFSKQCRS QCINYGRYCA PNPEQDFGKG YDGSDVVVQN LYQICVFKVA KETGKPWLWW
301: DYVTHFAIRC SMKEKNYNEK CAHRVIKSLG LNQKAVDMCV GDPNADEENP VLKAEQDAQI GKDSGNHVTI LPTLVINNRQ YRGKLEKAAV LKALCASFRE
401: NNEPSVCLNE EEDIQTNQCL NNNGGCWQDM AANVTACKDT SVGTVCECPV LQGVKYIGDG YNHCEANIGN
001: MKQLLCYLPW LLLLTLLVSP LNDARFVVEK NSLSVTSPES IKGTHDSAIG NFGIPQYGGS MAGTVVYPKE NQKSCKEFSD FSISFKSQPG ALPTFLLVDR
101: GDCFFALKVW NAQKAGASAV LVADNVDEPL ITMDTPEEDV SSAKYIENIT IPSALVTKGF GEKLKKAISG GDMVNLNLDW REAVPHPDDR VEYELWTNSN
201: DECGVKCDML MEFVKDFKGA AQILEKGGFT QFRPHYITWY CPHAFTLSRQ CKSQCINKGR YCAPDPEQDF SSGYDGKDVV VENLRQLCVY KVANETGKPW
301: VWWDYVTDFQ IRCPMKEKKY NKECADSVIK SLGIDSKKLD KCMGDPDADL DNPVLKEEQD AQVGKGSRGD VTILPTLVVN NRQYRGKLEK SAVLKALCSG
401: FEETTEPAIC LSTDVESNEC LDNNGGCWQD KSANITACKD TFRGRVCECP TVDGVQFKGD GYSHCEPSGP GRCTINNGGC WHEERDGHAF SACVDKDSVK
501: CECPPGFKGD GTKKCEDINE CKEKKACQCP ECSCKNTWGS YECSCSGDLL YIRDHDTCIS KTGAQVRSAW AAVWLIMLSL GLAAAGAYLV YKYRLRQYMD
601: SEIRAIMAQY MPLDSQPEIP NHVNDERA
101: GDCFFALKVW NAQKAGASAV LVADNVDEPL ITMDTPEEDV SSAKYIENIT IPSALVTKGF GEKLKKAISG GDMVNLNLDW REAVPHPDDR VEYELWTNSN
201: DECGVKCDML MEFVKDFKGA AQILEKGGFT QFRPHYITWY CPHAFTLSRQ CKSQCINKGR YCAPDPEQDF SSGYDGKDVV VENLRQLCVY KVANETGKPW
301: VWWDYVTDFQ IRCPMKEKKY NKECADSVIK SLGIDSKKLD KCMGDPDADL DNPVLKEEQD AQVGKGSRGD VTILPTLVVN NRQYRGKLEK SAVLKALCSG
401: FEETTEPAIC LSTDVESNEC LDNNGGCWQD KSANITACKD TFRGRVCECP TVDGVQFKGD GYSHCEPSGP GRCTINNGGC WHEERDGHAF SACVDKDSVK
501: CECPPGFKGD GTKKCEDINE CKEKKACQCP ECSCKNTWGS YECSCSGDLL YIRDHDTCIS KTGAQVRSAW AAVWLIMLSL GLAAAGAYLV YKYRLRQYMD
601: SEIRAIMAQY MPLDSQPEIP NHVNDERA
Arabidopsis Description
VSR3VSR3 [Source:UniProtKB/TrEMBL;Acc:A0A178VT51]
SUBAcon: [plasma membrane,extracellular,vacuole]
SUBAcon: [plasma membrane,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.