Factsheet for PGSC0003DMT400055929

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
extracellular 1
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g079920.2.1	Tomato	cytosol	96.64	95.72
VIT_00s1356g00010.t01	Wine grape	cytosol	69.3	74.87
PGSC0003DMT400049491	Potato	cytosol, nucleus, peroxisome	66.43	64.42
TraesCS3D01G317900.1	Wheat	nucleus	64.03	55.51
Os01t0785900-01	Rice	mitochondrion, nucleus, peroxisome, plastid	64.27	55.26
HORVU3Hr1G077490.2	Barley	nucleus	64.03	55.05
TraesCS3B01G353600.1	Wheat	nucleus	64.03	54.94
Zm00001d043243_P001	Maize	nucleus	64.75	53.47
Zm00001d012605_P001	Maize	nucleus	63.79	53.09
TraesCS3A01G324600.1	Wheat	nucleus	64.03	52.66
EES03733	Sorghum	nucleus	64.27	51.24
Os06t0683000-01	Rice	cytosol, nucleus, plastid	51.32	46.02
EER88828	Sorghum	cytosol	43.65	42.13
Zm00001d014485_P001	Maize	nucleus, plastid	43.88	41.78
PGSC0003DMT400025521	Potato	plastid	29.74	39.49
PGSC0003DMT400074652	Potato	plastid	29.5	38.2
PGSC0003DMT400076665	Potato	cytosol	12.23	32.08
PGSC0003DMT400078031	Potato	extracellular, vacuole	28.3	31.72
PGSC0003DMT400012224	Potato	nucleus	22.3	31.1

Protein Annotations

EnsemblPlants:PGSC0003DMT400055929	EnsemblPlantsGene:PGSC0003DMG400021725	EntrezGene:102601024	Gene3D:3.90.228.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR31681	PANTHER:PTHR31681:SF23	PGSC:PGSC0003DMG400021725
RefSeq:XP_006365876.1	ScanProsite:PS00028	SEG:seg	SUPFAM:SSF56399	UniParc:UPI000294DEBD	UniProt:M1BYS0
MapMan:15.5.15	:	:	:	:	:

Description

Transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400021725]

Coordinates

chr2:-:35649287..35651231

Molecular Weight (calculated)

45349.7 Da

IEP (calculated)

9.926

GRAVY (calculated)

-0.323

Length

417 amino acids

Sequence
(BLAST)

001: MPAVWFALKK SLQCRSEIKD VYDPRSDGRN LSKISTKKAT TGRSGCSRSI ANLKDVIHGS KRHMEKPPLQ SPRSIGSSEL LNPITHEVVL SNSTCELKIT
101: SCNFQDGNGS STGNNVESIS AFMGTLKPGT PGPGGHHIGS SRKYRGFGSP IRKGSPGNLS RKTGPGFGGV VSRPKASYGA DSHGLTCHKC GEQFVKWEAV
201: EAHHLSKHAV TELVEGDSSR KIVEIICRTS WSKPENSSNG IERILKVHNM QKVLAQFEEY RELVKIKASK LAKKHPRCLA DGNELLRFFG TTVECSLGIN
301: SSSSLCTSEK CKVCRILQHG FSIKKEINGG VGVFTASTSG RALEAIEENM LSWRKALIVC RVIAGRVHRP LENVQELIGQ SGFDSLAGKV GLYSNIEELY
401: LLSPKALLPC FVVICKS

Best Arabidopsis Sequence Match ( AT5G54630.1 )
(BLAST)

001: MEDSSKKSQK KKKNKSKNNI PTVWFSLKKS LHCKSEPSDV HDPISTTKQQ QHLSTISTKK ISGISSGGAA VCGGGLSGCS RSIANLKDVI HGSKRHFEKP
101: PISSPRSIGS NEFLNPITHE VILSNSTCEL KITGVGDMAS PVGAADSGGG GGGGNGRSTT YVGMLRPGTP MHYLNHSASY RSQTRKGSFA LSERDRGGGG
201: GGEGLGFHTN RRVSLEMNRE STINGGNNSS VSCHKCGEQF NKLEAAEAHH LSKHAVTELV EGDSSRKIVE IICRTSWLKS ENQCGRIDRV LKVHNMQKTL
301: ARFEEYRETV KIRASKLQKK HPRCLADGNE LLRFHGTTVA CGLGINGSTS VCTAEKCCVC RIIRNGFSSK REKNNGVGVF TASTSGRAFE SILVNGGDES
401: GDVDRTVRKV LIVCRVIAGR VHRPVENVEE MNGLMSGFDS LAGKVGLYTN VEELYLLNPK ALLPCFVVIC KP

Arabidopsis Description

AT5g54630/MRB17_13 [Source:UniProtKB/TrEMBL;Acc:Q9FIU1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.