Factsheet for Os03t0264600-00

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

nucleus 3
endoplasmic reticulum 2
mitochondrion 1
plasma membrane 2
plastid 1
extracellular 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, nucleus
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	mitochondrion, nucleus, plasma membrane, plastid
PProwler:	secretory
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G215000.1	Wheat	golgi	73.61	79.4
TraesCS4A01G089900.1	Wheat	endoplasmic reticulum, golgi	73.61	79.4
TraesCS4B01G214400.1	Wheat	golgi	73.39	78.98
HORVU4Hr1G061070.1	Barley	golgi	73.18	77.5
EER92505	Sorghum	extracellular, plasma membrane	72.1	73.85
Zm00001d028537_P001	Maize	endoplasmic reticulum, plasma membrane	69.1	69.7
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	41.85	52.56
VIT_06s0004g06240.t01	Wine grape	plastid	33.05	46.25
AT2G29660.1	Thale cress	golgi, plasma membrane	34.33	42.9
Bra018369.1-P	Field mustard	extracellular, golgi, plastid	34.33	42.44
CDY51355	Canola	golgi	33.69	42.32
CDY02000	Canola	golgi	34.12	42.29
Bra039993.1-P	Field mustard	extracellular, golgi, plastid	33.69	42.2
CDX97869	Canola	golgi	33.26	42.12
KRG98330	Soybean	endoplasmic reticulum, golgi	34.33	41.88
PGSC0003DMT400078031	Potato	extracellular, vacuole	32.19	40.32
Solyc06g076820.1.1	Tomato	extracellular, vacuole	32.62	40.0
Os10t0554001-01	Rice	cytosol	15.24	39.01
CDY45464	Canola	golgi	34.12	34.27
Os02t0661600-00	Rice	mitochondrion	18.88	28.76
Os11t0169400-01	Rice	nucleus	23.39	25.65
Os04t0115500-00	Rice	nucleus	24.25	23.54
Os04t0690100-01	Rice	nucleus	24.89	23.29
Os01t0785900-01	Rice	mitochondrion, nucleus, peroxisome, plastid	23.61	22.68
Os06t0683000-01	Rice	cytosol, nucleus, plastid	22.1	22.15

Protein Annotations

EnsemblPlants:Os03t0264600-00	EnsemblPlantsGene:Os03g0264600	Gene3D:3.90.228.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR31681
PANTHER:PTHR31681:SF4	PFscan:PS50157	ProteinID:BAS83393.1	ScanProsite:PS00028	SEG:seg	SignalP:SignalP-noTM
SUPFAM:SSF56399	TMHMM:TMhelix	UniParc:UPI000393978B	UniProt:A0A0N7KGZ5	MapMan:15.5.15	:

Description

Similar to Nucleic acid binding protein. (Os03t0264600-00)

Coordinates

chr3:-:8713068..8714646

Molecular Weight (calculated)

49468.8 Da

IEP (calculated)

8.536

GRAVY (calculated)

-0.086

Length

466 amino acids

Sequence
(BLAST)

001: VAEDSVGGKD TGMAGGGRCS SLLRGFVSLF FLLFIHIGHA GCCFSTGSST QTLEEDDTGH GADGRGGGGG GSKRRKISPL AFSPSVSSST VADERSRARR
101: RQVSSLATSV RFYLHRIFSY SSGAKNGAGA PAAEEEDEAV TTTVSSPLAQ SSSCLPQRQA SSSVVLSTPS SPCASPFLSP LSPQSLSITP AVPSSPHNRQ
201: IPQATTRQSS FRSFAARGDV FPCKVCGEVL SKPQQLELHQ AMKHSLSELS SLDSSMNIIR MIFLAGWKPA VMPGAGEPPS VRRILRIHHN PRVLTRFEEY
301: RDLVRARAAR RCAGAGAAAV EERCVADGNE RLRFYCSTML CTLGAGVCGS PYCCTCSILR HGFAGKQADV DGIATYSSGR AAHASLPDDV EREFAFLQVR
401: RAMLVCRVVA GRVGRGAADD KVAYDSMVPL LPTSSFAAAT RGDDDVELLV FNPRAVLPCF VIIYSC

Best Arabidopsis Sequence Match ( AT2G29660.1 )
(BLAST)

001: MAARKLGSLL RQYFFSLCFL FLGCFFFPKD ADYKQKRRKK KLRRVSSSSG SSLSSSWTYL KRVFLSTTRI SKSRNQTHPN VTLTSARSSQ NSLVTLVQPD
101: TTNQPDPETR IHQQTEFEIS SSDEIFPCNS CGEIFPKINL LENHIAIKHA VSELIAGESS TNIVKIIFKS GWPEQGNYKS PVINRILKIH NSSKILTRFE
201: EYREFVKAKA ARSNGGGRRW DDERCVADGN ELLRFYCSTF MCDLGQNGKS NLCGHQYCSI CGIIGSGFSP KLDGIATLAT GWRGHVAVPE EVEEEFGFMN
301: VKRAMLVCRV VAGRVGCDLI DDDDVDKSDG GGYDSLVGQS GNKSGALLRI DDDELLVFNP RAVLPCFVIV YTV

Arabidopsis Description

At2g29660 [Source:UniProtKB/TrEMBL;Acc:O82389]
SUBAcon: [plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.