Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os03t0422702-00 | Rice | cytosol, plastid | 24.74 | 37.3 |
| Os04t0526000-01 | Rice | plastid | 32.11 | 29.61 |
| Os02t0828566-01 | Rice | nucleus | 35.79 | 28.81 |
| Os02t0635800-01 | Rice | nucleus | 30.53 | 27.49 |
| Os04t0194600-01 | Rice | plastid | 23.68 | 25.57 |
| Os01t0924400-01 | Rice | nucleus | 35.26 | 21.14 |
| Os06t0226700-01 | Rice | nucleus | 41.05 | 20.16 |
| Os08t0544800-01 | Rice | nucleus | 38.42 | 19.57 |
| Os02t0747400-01 | Rice | nucleus | 41.58 | 19.27 |
| Os11t0175700-00 | Rice | nucleus, plastid | 37.37 | 17.49 |
| Os12t0173300-00 | Rice | nucleus | 38.42 | 17.46 |
| Os09t0521300-00 | Rice | nucleus | 34.21 | 17.06 |
Protein Annotations
| MapMan:15.5.19 | UniProt:A0A0P0WD13 | ProteinID:BAS90304.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR017887 | EnsemblPlantsGene:Os04g0542302 | EnsemblPlants:Os04t0542302-00 | PFAM:PF03634 | PFscan:PS51369 | PANTHER:PTHR31072 |
| PANTHER:PTHR31072:SF1 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI0003938A7B | SEG:seg | : |
Description
Similar to TCP-domain protein. (Os04t0542302-00)
Coordinates
chr4:+:27163250..27165117
Molecular Weight (calculated)
20902.6 Da
IEP (calculated)
12.764
GRAVY (calculated)
-0.678
Length
190 amino acids
Sequence
(BLAST)
(BLAST)
001: DRSGARTRTQ HTKVDGQGRR IRMPALCAAR IFQLTRELSH KSDGDTVQWL LQQAEPAIVA ATGTGTIPVL PLGSAPSPSQ PHSPLLPLAP RLRALAPRRL
101: PPPRLRRLRL HRAGGRRRLR SPWPTASPPA PPPSALGPPR RRRLHLCPPS ASLAPSPPSP RRRRLRRPPR RHRPSPPSSI CFSVCLSESA
101: PPPRLRRLRL HRAGGRRRLR SPWPTASPPA PPPSALGPPR RRRLHLCPPS ASLAPSPPSP RRRRLRRPPR RHRPSPPSSI CFSVCLSESA
001: MDLSDIRNNN NDTAAVATGG GARQLVDASL SIVPRSTPPE DSTLATTSST ATATTTKRST KDRHTKVDGR GRRIRMPALC AARVFQLTRE LGHKSDGETI
101: EWLLQQAEPA IVAATGTGTI PANFSTLSVS LRSSGSTLSA PPSKSVPLYG ALGLTHHQYD EQGGGGVFAA HTSPLLGFHH QLQHHQNQNQ NQDPVETIPE
201: GENFSRKRYR SVDLSKENDD RKQNENKSLK ESETSGPTAA PMWAVAPPSR SGAGNTFWML PVPTTAGNQM ESSSNNNTAA GHRAPPMWPF VNSAGGGAGG
301: GGGAATHFMA GTGFSFPMDQ YRGSPLQLGS FLAQPQPTQN LGLSMPDSNL GMLAALNSAY SRGGNANANA EQANNAVEHQ EKQQQSDHDD DSREENSNSS
401: E
101: EWLLQQAEPA IVAATGTGTI PANFSTLSVS LRSSGSTLSA PPSKSVPLYG ALGLTHHQYD EQGGGGVFAA HTSPLLGFHH QLQHHQNQNQ NQDPVETIPE
201: GENFSRKRYR SVDLSKENDD RKQNENKSLK ESETSGPTAA PMWAVAPPSR SGAGNTFWML PVPTTAGNQM ESSSNNNTAA GHRAPPMWPF VNSAGGGAGG
301: GGGAATHFMA GTGFSFPMDQ YRGSPLQLGS FLAQPQPTQN LGLSMPDSNL GMLAALNSAY SRGGNANANA EQANNAVEHQ EKQQQSDHDD DSREENSNSS
401: E
Arabidopsis Description
TCP8Transcription factor TCP8 [Source:UniProtKB/Swiss-Prot;Acc:Q9C518]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.