CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, cytosol

Predictor Summary:

nucleus 1
endoplasmic reticulum 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, plastid
Any Predictor:	cytosol, endoplasmic reticulum, nucleus
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82216	Canola	cytosol, endoplasmic reticulum, plastid	96.1	95.9
Bra001813.1-P	Field mustard	cytosol, endoplasmic reticulum, plastid	92.42	92.83
AT1G51550.1	Thale cress	plastid	67.75	65.48
KRH47295	Soybean	endoplasmic reticulum, plasma membrane, plastid	53.68	54.27
PGSC0003DMT400068170	Potato	endoplasmic reticulum, plasma membrane, plastid	54.55	54.08
VIT_09s0054g00610.t01	Wine grape	plastid	53.46	52.22
KRH44610	Soybean	endoplasmic reticulum, nucleus, peroxisome	49.35	51.82
Os08t0230300-00	Rice	cytosol, endoplasmic reticulum, nucleus	47.19	48.66
TraesCS7A01G291800.1	Wheat	cytosol	44.81	46.62
TraesCS7D01G290000.1	Wheat	cytosol	44.59	46.4
TraesCS7B01G197900.1	Wheat	cytosol	44.37	46.17
HORVU7Hr1G067710.13	Barley	cytosol	44.16	45.54
Zm00001d024365_P001	Maize	cytosol, nucleus, peroxisome	46.1	42.94
GSMUA_Achr1P23600_001	Banana	plastid	48.05	42.94
OQU80127	Sorghum	cytosol, nucleus, peroxisome	47.19	42.25
Solyc06g063300.2.1	Tomato	endoplasmic reticulum, plastid	54.33	40.88
CDY39128	Canola	nucleus	22.08	16.89
CDX82603	Canola	nucleus	22.08	16.59
CDY39129	Canola	cytosol	21.43	16.31
CDX82604	Canola	cytosol	21.43	16.31
CDY49135	Canola	nucleus	21.21	16.23
CDY39127	Canola	nucleus	21.21	15.88

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	Gene3D:2.120.10.80	UniProt:A0A078H3K4	EnsemblPlants:CDY32406	ProteinID:CDY32406
ProteinID:CDY32406.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00051995001	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	PFAM:PF00646	PFAM:PF13418
PFscan:PS50181	PANTHER:PTHR23244	PANTHER:PTHR23244:SF324	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0004EB48BA
SEG:seg	:	:	:	:	:

Description

BnaC03g41900DBnaC03g41900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H3K4]

Coordinates

chrLK032294:-:165967..167434

Molecular Weight (calculated)

50907.8 Da

IEP (calculated)

6.569

GRAVY (calculated)

-0.125

Length

462 amino acids

Sequence
(BLAST)

001: MAEIASTSSG RGHQSPPAPI MNLADDHLFT VLLLLPVDSI LSFSATCKRF RNLACSDSLW ESLWRREWGP SSAESVKSSG LLLPWMVLFK RVCKLDSVSC
101: HRISDLDDDE EESSSLLPLP RASHSLNFVT DYLVLFGGGR EGGRHLDDTW TAYVGETNQK TLRWKKADSV TPGGRFGHTC VVIGDSLVLF GGINDRGERL
201: NDTWIGRVGC HGKQLLWKLL TVVGAPKPPP RGAHAASCIS EKTMVVQGGI GLSGVRLGDT WILELSEDLN SGTWHEVVSN ALLPPRSGHT LTYIRENQVV
301: LFGGRGLGYD VLNDVWLLDT QEQCERWIQI FYDFQDLEES ASLPRVGHSA TLILGGRILI YGGEDTFRHK KDDFWALDVK TIPSKGLQVD GGAVCLNGSK
401: AWKRLDGVSY RPKGRSFHRA CADGSGRYVY VFGGMVDGLN LAVTSSLRFE NELFMVELLL GL

Best Arabidopsis Sequence Match ( AT1G51550.1 )
(BLAST)

001: MAAESTRNSS PPSTSQSSSP IINLPDDHLL TILLLLPVDS ILSFSMTCKR YKSLACSDSL WEALCEREWG PTSVDALKLS SLRDGFSWML MFQRVYKMDS
101: VCCHKISDPD DDDEESSSFP IPRASHSLNF VNDHLVLFGG GCQGGRHLDD TWTSYVDKSN QSILKWKKVK SGTPSGRFGH TCIVIGEYLL LFGGINDRGE
201: RLNDTWIGQV FCHEGLSWKL LNVGSLQRPR PPPRGAHSAC CIAEKKMVVH GGIGLNGVRL GDTWILELSE DFSSGTWHMV ESPQLPPPRS GHTLTCIREN
301: QVVLFGGRGL GYDVLDDVWI LDIQEPCEEK WIQIFYDFQD VPEYASLPRV GHSATLVLGG RILIYGGEDS YRHRKDDFWV LDVKTIPSSG LKPQGLSLNG
401: SSVWKKLDRI SYGPKSRSFH RACADCSGRF LYVFGGMVDG LLQPAASSGL RFDGELFMVE LVLGFSDLDH QQRPGKSM

Arabidopsis Description

F-box/kelch-repeat protein At1g51550 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8K7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.