CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra038830.1-P	Field mustard	nucleus	99.35	99.35
CDY49135	Canola	nucleus	96.43	98.51
CDY39128	Canola	nucleus	91.09	93.05
CDX82603	Canola	nucleus	92.38	92.68
CDX82604	Canola	cytosol	82.01	83.36
CDY39129	Canola	cytosol	81.69	83.03
KRH19039	Soybean	cytosol	72.61	72.61
KRH12251	Soybean	cytosol	71.8	72.5
KRH37279	Soybean	cytosol	71.96	72.31
KRH02848	Soybean	cytosol	72.29	72.29
VIT_11s0052g00720.t01	Wine grape	cytosol	8.75	42.52
Solyc07g017740.2.1	Tomato	cytosol	8.91	35.48
CDX82216	Canola	cytosol, endoplasmic reticulum, plastid	16.21	21.6
CDY32406	Canola	cytosol, endoplasmic reticulum, plastid	15.88	21.21

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.4	Gene3D:2.120.10.80	MapMan:26.1.2.3.1	Gene3D:3.30.450.20	UniProt:A0A078HMM6
EnsemblPlants:CDY39127	ProteinID:CDY39127	ProteinID:CDY39127.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00067296001	InterPro:IPR000014	InterPro:IPR001810	InterPro:IPR015915
InterPro:Kelch-typ_b-propeller	InterPro:PAS	InterPro:PAS-like_dom_sf	PFAM:PF12937	PFAM:PF13415	PFAM:PF13418
PFAM:PF13426	PFscan:PS50112	PANTHER:PTHR23244	PANTHER:PTHR23244:SF348	SUPFAM:SSF117281	SUPFAM:SSF55785
SUPFAM:SSF81383	TIGRFAMs:TIGR00229	UniParc:UPI0004EF4BB4	SEG:seg	:	:

Description

BnaA07g01230DBnaA07g01230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HMM6]

Coordinates

chrLK032441:-:19674..21876

Molecular Weight (calculated)

67366.2 Da

IEP (calculated)

5.033

GRAVY (calculated)

-0.138

Length

617 amino acids

Sequence
(BLAST)

001: MEWDSDSDLS DGDEVADDGW FGGDSGPVPF PEISLPGTTP CGFVVSDALE PDQPIIYVNT VFEIVTGYRA EEVIGRNCRF LQCRGPYAKR RHPSVDSTVV
101: SKMRQCLEKG IEFQGELLNF RKDGSPLMNK LRLVPIREDD EITHFIGVLS FTDADIDLTP FPDLSAKEIP RRSRSFSSAL PTGERNVSRG LCGIFELSDE
201: VIALKILSQL APSDIASVGC VCRRLNEVTK NDDVWRMVCQ NTWGTEATRV LESIPGEKRI GWVRLAREFT THEANAWRKF TFGGTVEPSR CNFSACAVGN
301: KIVIFGGEGV NMQPMNDTFV LDLGSSSPQW KSVLVNSPPP GRWGHTLSCV DGSHLVVFGG YGSHGLLNDV FLLDLDADPP TWREVSGLAP PIPRSWHSSC
401: TLDGTKLIVS GGCADSGALL NDTFLLDLSM DTPTWREIPV PWSPPSRLGH TLTVYGDRKI LMFGGLAKLG TLRFRSNDVF TMDLSNDEPC WRPVIGYGSS
501: LPGGMAAPPP RLDHVAVSLP GGRVLIFGGS VAGLASASQL YLLDPAEDNP AWRILSVKGS PPRFAWGHTT CVIGGTRLVI LGGQTGEEWM LNEAHELLLA
601: TSSTTISSSR HEEKRIF

Best Arabidopsis Sequence Match ( AT2G18915.2 )
(BLAST)

001: MQNQMEWDSD SDLSGGDEVA EDGWFGGDNG AIPFPVGSLP GTAPCGFVVS DALEPDNPII YVNTVFEIVT GYRAEEVIGR NCRFLQCRGP FTKRRHPMVD
101: STIVAKMRQC LENGIEFQGE LLNFRKDGSP LMNKLRLVPI REEDEITHFI GVLLFTDAKI DLGPSPDLSA KEIPRISRSF TSALPIGERN VSRGLCGIFE
201: LSDEVIAIKI LSQLTPGDIA SVGCVCRRLN ELTKNDDVWR MVCQNTWGTE ATRVLESVPG AKRIGWVRLA REFTTHEATA WRKFSVGGTV EPSRCNFSAC
301: AVGNRIVIFG GEGVNMQPMN DTFVLDLGSS SPEWKSVLVS SPPPGRWGHT LSCVNGSRLV VFGGYGSHGL LNDVFLLDLD ADPPSWREVS GLAPPIPRSW
401: HSSCTLDGTK LIVSGGCADS GALLSDTFLL DLSMDIPAWR EIPVPWTPPS RLGHTLTVYG DRKILMFGGL AKNGTLRFRS NDVYTMDLSE DEPSWRPVIG
501: YGSSLPGGMA APPPRLDHVA ISLPGGRILI FGGSVAGLDS ASQLYLLDPN EEKPAWRILN VQGGPPRFAW GHTTCVVGGT RLVVLGGQTG EEWMLNEAHE
601: LLLATSTTAS T

Arabidopsis Description

ADO2Adagio protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8W420]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.