CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra038831.1-P	Field mustard	nucleus	99.17	97.24
CDX82603	Canola	nucleus	98.68	96.91
CDY49135	Canola	nucleus	92.55	92.55
CDY39127	Canola	nucleus	93.05	91.09
CDX82604	Canola	cytosol	83.11	82.7
CDY39129	Canola	cytosol	82.95	82.54
KRH37279	Soybean	cytosol	74.67	73.45
KRH12251	Soybean	cytosol	74.01	73.16
KRH02848	Soybean	cytosol	74.34	72.77
KRH19039	Soybean	cytosol	74.34	72.77
VIT_11s0052g00720.t01	Wine grape	cytosol	8.94	42.52
Solyc07g017740.2.1	Tomato	cytosol	9.44	36.77
CDY32406	Canola	cytosol, endoplasmic reticulum, plastid	16.89	22.08
CDX82216	Canola	cytosol, endoplasmic reticulum, plastid	16.72	21.81

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.4	Gene3D:2.120.10.80	MapMan:26.1.2.3.1	Gene3D:3.30.450.20	UniProt:A0A078HQT2
EnsemblPlants:CDY39128	ProteinID:CDY39128	ProteinID:CDY39128.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00067297001	InterPro:IPR000014	InterPro:IPR001810	InterPro:IPR015915
InterPro:Kelch-typ_b-propeller	InterPro:PAS	InterPro:PAS-like_dom_sf	PFAM:PF12937	PFAM:PF13415	PFAM:PF13418
PFAM:PF13426	PFscan:PS50112	PANTHER:PTHR23244	PANTHER:PTHR23244:SF348	SUPFAM:SSF117281	SUPFAM:SSF55785
SUPFAM:SSF81383	TIGRFAMs:TIGR00229	UniParc:UPI0004EF1B82	SEG:seg	:	:

Description

BnaA07g01240DBnaA07g01240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HQT2]

Coordinates

chrLK032441:+:23870..27131

Molecular Weight (calculated)

65864.4 Da

IEP (calculated)

5.033

GRAVY (calculated)

-0.172

Length

604 amino acids

Sequence
(BLAST)

001: MEWDSDSDLS GGDEVADDGW FGGDSGPVPF PEISLPGTTP CGFVVSDALE PDQPIIYVNT VFEIVTGYRA EEVIGRNCRF LQCRGPYAKR RHPSVDSTVV
101: SKMRQCLEKG IEFQGELLNF RKDGSPLMNK LRLVPIREED EITHFIGVLS FTDAEIDLGP FPDLSTKPIP RRSRSFASAS PTGDRNVSRG LGGIFDLSDE
201: VIALKILSKL TPPDIASVGC VCRRLNELTK NDDVWRMVCQ NTWGTEATRV LESVPGAKRI GWGRLAREFT THEVTAWRKF SFGGTVEPSR CNFSACAVGN
301: RIVIFGGEGV NMQPMNDTFV LDLGSTSPEW KSVLVSSPPP GRWGHTLSCV NGSRLVVFGG YGSHGLLNDV FMLDLDADPP TWREVSGLAP PIPRSWHSSC
401: TLDGTKLIVS GGCADSGALL NDTFLLDLSM DTPTWREIPV PWSPPSRLGH TLTVYGDRKI LMFGGLAKSG TLRFRSNDVY TMDLSEDEPC WRPVIGYGSS
501: LPGGMAAPPP RLDHVAVSLP GGRVLIFGGS VAGLDSASQL YILDPTEENP AWRILSVKGS PPQIAWGHTT CVVGGTRLVI LGGQTGEEWM LNEAHELHEE
601: KRVF

Best Arabidopsis Sequence Match ( AT2G18915.2 )
(BLAST)

001: MQNQMEWDSD SDLSGGDEVA EDGWFGGDNG AIPFPVGSLP GTAPCGFVVS DALEPDNPII YVNTVFEIVT GYRAEEVIGR NCRFLQCRGP FTKRRHPMVD
101: STIVAKMRQC LENGIEFQGE LLNFRKDGSP LMNKLRLVPI REEDEITHFI GVLLFTDAKI DLGPSPDLSA KEIPRISRSF TSALPIGERN VSRGLCGIFE
201: LSDEVIAIKI LSQLTPGDIA SVGCVCRRLN ELTKNDDVWR MVCQNTWGTE ATRVLESVPG AKRIGWVRLA REFTTHEATA WRKFSVGGTV EPSRCNFSAC
301: AVGNRIVIFG GEGVNMQPMN DTFVLDLGSS SPEWKSVLVS SPPPGRWGHT LSCVNGSRLV VFGGYGSHGL LNDVFLLDLD ADPPSWREVS GLAPPIPRSW
401: HSSCTLDGTK LIVSGGCADS GALLSDTFLL DLSMDIPAWR EIPVPWTPPS RLGHTLTVYG DRKILMFGGL AKNGTLRFRS NDVYTMDLSE DEPSWRPVIG
501: YGSSLPGGMA APPPRLDHVA ISLPGGRILI FGGSVAGLDS ASQLYLLDPN EEKPAWRILN VQGGPPRFAW GHTTCVVGGT RLVVLGGQTG EEWMLNEAHE
601: LLLATSTTAS T

Arabidopsis Description

ADO2Adagio protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8W420]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.