CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39128	Canola	nucleus	96.91	98.68
Bra038831.1-P	Field mustard	nucleus	98.54	98.38
CDY39127	Canola	nucleus	92.68	92.38
CDY49135	Canola	nucleus	89.92	91.56
CDY39129	Canola	cytosol	82.76	83.86
CDX82604	Canola	cytosol	82.6	83.69
KRH37279	Soybean	cytosol	73.66	73.78
KRH12251	Soybean	cytosol	73.17	73.65
KRH02848	Soybean	cytosol	73.5	73.26
KRH19039	Soybean	cytosol	73.5	73.26
VIT_11s0052g00720.t01	Wine grape	cytosol	8.78	42.52
Solyc07g017740.2.1	Tomato	cytosol	9.27	36.77
CDY32406	Canola	cytosol, endoplasmic reticulum, plastid	16.59	22.08
CDX82216	Canola	cytosol, endoplasmic reticulum, plastid	16.42	21.81

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.4	Gene3D:2.120.10.80	MapMan:26.1.2.3.1	Gene3D:3.30.450.20	EnsemblPlants:CDX82603
ProteinID:CDX82603	ProteinID:CDX82603.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00137782001	InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR000014	InterPro:IPR001810	InterPro:IPR015915
InterPro:Kelch-typ_b-propeller	InterPro:PAS	InterPro:PAS-like_dom_sf	PFAM:PF12937	PFAM:PF13415	PFAM:PF13418
PFAM:PF13426	PFscan:PS50112	PANTHER:PTHR23244	PANTHER:PTHR23244:SF348	SUPFAM:SSF50965	SUPFAM:SSF55785
SUPFAM:SSF81383	TIGRFAMs:TIGR00229	UniParc:UPI0004EAC4D4	SEG:seg	:	:

Description

BnaC07g02630D

Coordinates

chrLK031829:+:187172..190115

Molecular Weight (calculated)

66997.8 Da

IEP (calculated)

5.189

GRAVY (calculated)

-0.151

Length

615 amino acids

Sequence
(BLAST)

001: MEWDSDSDLS GGDEVADDGW FGGDSGPVPF PEISLPGTTP CGFVVSDALE PDQPIIYVNT VFEIVTGYRA EEVIGRNCRF LQCRGPYAKR RHPSVDSTVV
101: SKMRQCLEKG IEFQGELLNF RKNGSPLMNK LRLVPIREED EITHFIGVLS FTDAEIDLGP FPDLSTKPIP RRSRSFASAS PIGDRNVSRG LGGIFDLSDE
201: VIALKILSKL TPPDIASVGC VCRRLNELTK NDDVWRMVCQ NTWGTEATRV LESVPGAKRI GWGRLAREFT THEVTAWRKF SFGGTVEPSR CNFSACAVGN
301: RIVIFGGEGV NMQPMNDTFV LDLGSTTPEW KSVLVSSPPP GRWGHTLSCV NGSRLVVFGG YGSHGLLNDV FMLDLDADPP TWREVSGLAP PIPRSWHSSC
401: TLDGTKLIVS GGCADSGALL NDTFLLDLSM DTPTWREIPV PWSPPSRLGH TLTVYGDRKI LMFGGLAKSG TLRFRSNDVY TMDLSEDEPC WRPVIGYGSS
501: LPGGMAAPPP RLDHVAVSLP GGRVLIFGGS VAGLDSASQL YILDPTEETP AWRILSVKGC PPQIAWGHTT CVVGGTRLVI LGGQTGEEWM LNEAHELLLA
601: TSSTTSSRHE EKRVF

Best Arabidopsis Sequence Match ( AT2G18915.2 )
(BLAST)

001: MQNQMEWDSD SDLSGGDEVA EDGWFGGDNG AIPFPVGSLP GTAPCGFVVS DALEPDNPII YVNTVFEIVT GYRAEEVIGR NCRFLQCRGP FTKRRHPMVD
101: STIVAKMRQC LENGIEFQGE LLNFRKDGSP LMNKLRLVPI REEDEITHFI GVLLFTDAKI DLGPSPDLSA KEIPRISRSF TSALPIGERN VSRGLCGIFE
201: LSDEVIAIKI LSQLTPGDIA SVGCVCRRLN ELTKNDDVWR MVCQNTWGTE ATRVLESVPG AKRIGWVRLA REFTTHEATA WRKFSVGGTV EPSRCNFSAC
301: AVGNRIVIFG GEGVNMQPMN DTFVLDLGSS SPEWKSVLVS SPPPGRWGHT LSCVNGSRLV VFGGYGSHGL LNDVFLLDLD ADPPSWREVS GLAPPIPRSW
401: HSSCTLDGTK LIVSGGCADS GALLSDTFLL DLSMDIPAWR EIPVPWTPPS RLGHTLTVYG DRKILMFGGL AKNGTLRFRS NDVYTMDLSE DEPSWRPVIG
501: YGSSLPGGMA APPPRLDHVA ISLPGGRILI FGGSVAGLDS ASQLYLLDPN EEKPAWRILN VQGGPPRFAW GHTTCVVGGT RLVVLGGQTG EEWMLNEAHE
601: LLLATSTTAS T

Arabidopsis Description

ADO2Adagio protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8W420]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.