Factsheet for Zm00001d024365_P001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, mitochondrion, peroxisome
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0230300-00	Rice	cytosol, endoplasmic reticulum, nucleus	72.78	80.58
OQU80127	Sorghum	cytosol, nucleus, peroxisome	82.66	79.46
TraesCS7A01G291800.1	Wheat	cytosol	66.33	74.1
TraesCS7D01G290000.1	Wheat	cytosol	66.33	74.1
TraesCS7B01G197900.1	Wheat	cytosol	65.93	73.65
HORVU7Hr1G067710.13	Barley	cytosol	65.12	72.1
GSMUA_Achr1P23600_001	Banana	plastid	53.43	51.26
PGSC0003DMT400068170	Potato	endoplasmic reticulum, plasma membrane, plastid	46.77	49.79
VIT_09s0054g00610.t01	Wine grape	plastid	46.98	49.26
KRH47295	Soybean	endoplasmic reticulum, plasma membrane, plastid	44.96	48.8
KRH44610	Soybean	endoplasmic reticulum, nucleus, peroxisome	42.54	47.95
Bra001813.1-P	Field mustard	cytosol, endoplasmic reticulum, plastid	43.35	46.74
CDX82216	Canola	cytosol, endoplasmic reticulum, plastid	43.15	46.22
CDY32406	Canola	cytosol, endoplasmic reticulum, plastid	42.94	46.1
AT1G51550.1	Thale cress	plastid	43.75	45.4
Solyc06g063300.2.1	Tomato	endoplasmic reticulum, plastid	46.17	37.3
Zm00001d007445_P001	Maize	cytosol	20.36	16.58
Zm00001d053091_P001	Maize	cytosol	20.36	16.34
Zm00001d015290_P001	Maize	cytosol	19.96	16.26
Zm00001d014594_P001	Maize	cytosol	20.36	15.88
Zm00001d036524_P001	Maize	cytosol	20.16	15.87
Zm00001d000306_P001	Maize	plastid	2.82	12.96

Protein Annotations

EnsemblPlants:Zm00001d024365_P001	EnsemblPlants:Zm00001d024365_T001	EnsemblPlantsGene:Zm00001d024365	Gene3D:1.20.1280.50	Gene3D:2.120.10.80	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	PANTHER:PTHR23244
PANTHER:PTHR23244:SF324	PFAM:PF13418	PFAM:PF13854	ProteinID:AQK41083.1	SEG:seg	SUPFAM:SSF117281
SUPFAM:SSF81383	UniParc:UPI0008429EC2	UniProt:A0A1D6IYY6	MapMan:19.2.2.8.1.4.6	:	:

Description

F-box/kelch-repeat protein

Coordinates

chr10:-:67166621..67173531

Molecular Weight (calculated)

54108.8 Da

IEP (calculated)

7.730

GRAVY (calculated)

-0.112

Length

496 amino acids

Sequence
(BLAST)

001: MGCGGGERME EDEAGTASSS SSPPIVQLGY DQVLSVLRLL PPEAVLSFAA TCRVFRAWAS SDALWEALCC RDWGSRATAA LAERRRDRGG GLQAPWRRVY
101: AEVARLGALS ARRVPARGAS PRPRASHSLN LVAGWLVLFG GGCEGACTFN ALISFHPCCQ CFLSLITDNG PDLGHHLDDT WVAYAGSGAG NRPPPILSWQ
201: QLASGTPGGR FSHSCLLVGD TLVLFGGITD QGQRLNDTWT GQIICEEPRR PRISWRLLEV GRLAPPPRGA HAACCVDDKF IVIHGGIGLY GSRLGDTWLL
301: DLSNGLQSGS WHQIGNTWPL PQPRSGHSLT WIGSTCMVLF GGRGSEFEVL NDVWLFDISD QYPKWKELKY GLSSALGELP FPRVGHSAIL VLGGKVLVYG
401: GEDSQRRRKD DFWILDTPAL LQYESGSKKM TRKMWKKLRI DGQCPNYRSF HGACVDASGC CVYIFGGMVD GLVHPSEALG MRFDGHLYQV ELVLHL

Best Arabidopsis Sequence Match ( AT1G51550.1 )
(BLAST)

001: MAAESTRNSS PPSTSQSSSP IINLPDDHLL TILLLLPVDS ILSFSMTCKR YKSLACSDSL WEALCEREWG PTSVDALKLS SLRDGFSWML MFQRVYKMDS
101: VCCHKISDPD DDDEESSSFP IPRASHSLNF VNDHLVLFGG GCQGGRHLDD TWTSYVDKSN QSILKWKKVK SGTPSGRFGH TCIVIGEYLL LFGGINDRGE
201: RLNDTWIGQV FCHEGLSWKL LNVGSLQRPR PPPRGAHSAC CIAEKKMVVH GGIGLNGVRL GDTWILELSE DFSSGTWHMV ESPQLPPPRS GHTLTCIREN
301: QVVLFGGRGL GYDVLDDVWI LDIQEPCEEK WIQIFYDFQD VPEYASLPRV GHSATLVLGG RILIYGGEDS YRHRKDDFWV LDVKTIPSSG LKPQGLSLNG
401: SSVWKKLDRI SYGPKSRSFH RACADCSGRF LYVFGGMVDG LLQPAASSGL RFDGELFMVE LVLGFSDLDH QQRPGKSM

Arabidopsis Description

F-box/kelch-repeat protein At1g51550 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8K7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.