Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G234000.1 | Wheat | nucleus | 97.34 | 96.24 |
| TraesCS4B01G081500.1 | Wheat | nucleus | 96.96 | 96.23 |
| HORVU4Hr1G013890.1 | Barley | nucleus | 93.54 | 92.13 |
| Zm00001d024790_P001 | Maize | nucleus | 44.11 | 47.35 |
| Zm00001d033325_P001 | Maize | nucleus, plastid | 55.51 | 46.5 |
| Zm00001d013724_P001 | Maize | nucleus | 58.17 | 45.67 |
| EER91220 | Sorghum | plastid | 58.56 | 43.87 |
| TraesCS3D01G271300.1 | Wheat | nucleus | 17.49 | 30.26 |
| TraesCS2D01G563400.1 | Wheat | nucleus | 22.05 | 28.02 |
| TraesCS2D01G563200.1 | Wheat | plastid | 21.67 | 25.79 |
| TraesCS2D01G563100.1 | Wheat | nucleus | 21.67 | 25.33 |
| GSMUA_Achr2P13350_001 | Banana | nucleus | 20.91 | 23.71 |
| TraesCS2D01G563000.1 | Wheat | nucleus, plastid | 19.39 | 23.5 |
| TraesCS5D01G259700.1 | Wheat | nucleus | 25.1 | 23.49 |
| TraesCS3D01G295100.1 | Wheat | nucleus | 17.49 | 23.0 |
| TraesCS1D01G336600.1 | Wheat | nucleus, plastid | 17.49 | 21.5 |
| TraesCS3D01G108600.1 | Wheat | nucleus | 18.63 | 21.3 |
| TraesCS4D01G285100.1 | Wheat | nucleus | 21.67 | 12.9 |
| TraesCS2D01G100300.1 | Wheat | mitochondrion, nucleus | 22.43 | 11.78 |
| TraesCS3D01G185500.2 | Wheat | nucleus | 22.81 | 11.15 |
| TraesCS3D01G193100.1 | Wheat | nucleus | 18.63 | 10.29 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G080100.1 | EnsemblPlantsGene:TraesCS4D01G080100 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR003851 | InterPro:Znf_Dof | PANTHER:PTHR31992 | PANTHER:PTHR31992:SF81 | PFAM:PD007478 | PFAM:PF02701 |
| PFscan:PS50884 | ScanProsite:PS01361 | SEG:seg | MapMan:15.5.1.5 | : | : |
Description
No Description!
Coordinates
chr4D:-:54126883..54127674
Molecular Weight (calculated)
27721.2 Da
IEP (calculated)
9.131
GRAVY (calculated)
-0.283
Length
263 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAPLHQLAP MQQALLAHPQ NCKHDAAATM AATDMACLQQ QQQQLMQLQP AAANPNTPSG AAREQCPRCA SYDTKFCYYN NYNTSQPRHF CRACRRYWTL
101: GGSLRNVPIG GSTRKRLRPA PQQAMRRPPV HFGAPPPPMP AQSHSQQAPQ GGLLSSLFAL GAAPLFEGRV GFDLGLGLPG LSQVGLGGSA GEFGLHSLGL
201: RGGHAGTSAP MLWPTAFLDN GNVDTWKVSG GGAAAMWAPE FSPAPAVAQV GGNGMFHGGA QIM
101: GGSLRNVPIG GSTRKRLRPA PQQAMRRPPV HFGAPPPPMP AQSHSQQAPQ GGLLSSLFAL GAAPLFEGRV GFDLGLGLPG LSQVGLGGSA GEFGLHSLGL
201: RGGHAGTSAP MLWPTAFLDN GNVDTWKVSG GGAAAMWAPE FSPAPAVAQV GGNGMFHGGA QIM
001: MMTSSHQSNT TGFKPRRIKT TAKPPRQINN KEPSPATQPV LKCPRCDSVN TKFCYYNNYS LSQPRHYCKN CRRYWTRGGA LRNVPIGGST RNKNKPCSLQ
101: VISSPPLFSN GTSSASRELV RNHPSTAMMM MSSGGFSGYM FPLDPNFNLA SSSIESLSSF NQDLHQKLQQ QRLVTSMFLQ DSLPVNEKTV MFQNVELIPP
201: STVTTDWVFD RFATGGGATS GNHEDNDDGE GNLGNWFHNA NNNALL
101: VISSPPLFSN GTSSASRELV RNHPSTAMMM MSSGGFSGYM FPLDPNFNLA SSSIESLSSF NQDLHQKLQQ QRLVTSMFLQ DSLPVNEKTV MFQNVELIPP
201: STVTTDWVFD RFATGGGATS GNHEDNDDGE GNLGNWFHNA NNNALL
Arabidopsis Description
DOF4.7Dof zinc finger protein-like [Source:UniProtKB/TrEMBL;Acc:Q0WQS4]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.