Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G116300.1 | |
| TraesCS3B01G135400.1 | |
| TraesCS3D01G118200.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G11540.1 | TraesCS3A01G116300.1 | AT1G22770.1 | 15155885 |
| AT3G11540.1 | TraesCS3B01G135400.1 | AT1G22770.1 | 15155885 |
| AT3G11540.1 | TraesCS3D01G118200.2 | AT1G22770.1 | 15155885 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G136300.1 | Wheat | cytosol, plastid | 97.13 | 97.44 |
| TraesCS6A01G107700.1 | Wheat | cytosol | 90.22 | 90.13 |
| HORVU6Hr1G019280.3 | Barley | cytosol | 87.14 | 84.71 |
| Os08t0559300-01 | Rice | cytosol | 81.93 | 83.17 |
| EES14080 | Sorghum | cytosol | 80.66 | 82.95 |
| Zm00001d031938_P001 | Maize | plastid | 80.02 | 82.66 |
| GSMUA_Achr3P22610_001 | Banana | cytosol | 73.75 | 75.6 |
| VIT_08s0007g02910.t01 | Wine grape | cytosol | 73.01 | 75.16 |
| AT3G11540.1 | Thale cress | cytosol | 72.16 | 74.29 |
| Bra034832.1-P | Field mustard | cytosol | 72.05 | 74.18 |
| CDY08515 | Canola | cytosol | 71.52 | 74.12 |
| CDY01033 | Canola | cytosol | 71.73 | 73.85 |
| PGSC0003DMT400023083 | Potato | cytosol | 72.79 | 73.58 |
| Solyc09g010180.2.1 | Tomato | extracellular | 72.58 | 73.36 |
| KRH72262 | Soybean | cytosol | 72.16 | 73.17 |
| KRH67954 | Soybean | cytosol | 71.41 | 73.12 |
| KRH32780 | Soybean | cytosol | 71.52 | 69.89 |
| KRG96211 | Soybean | plastid | 71.52 | 69.31 |
| KRH38138 | Soybean | cytosol | 13.82 | 68.78 |
| CDX73870 | Canola | cytosol | 62.7 | 65.56 |
| Bra001408.1-P | Field mustard | cytosol | 62.7 | 65.56 |
| CDY00739 | Canola | cytosol | 70.46 | 62.02 |
| TraesCS2D01G274800.1 | Wheat | endoplasmic reticulum | 23.91 | 22.82 |
| TraesCS4D01G215500.1 | Wheat | mitochondrion | 7.23 | 8.08 |
Protein Annotations
| KEGG:00514+2.4.1.255 | Gene3D:1.25.40.10 | MapMan:18.1.2.2.1 | Gene3D:3.40.50.11380 | Gene3D:3.40.50.2000 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR011990 | InterPro:IPR013026 | InterPro:IPR019734 |
| InterPro:OGT/SEC/SPY_C | PFAM:PF00515 | PFAM:PF13181 | PFAM:PF13374 | PFAM:PF13432 | PFAM:PF13844 |
| PFscan:PS50005 | PFscan:PS50293 | PANTHER:PTHR44835 | SMART:SM00028 | SMART:SM00671 | SUPFAM:SSF48452 |
| InterPro:Sel1-like | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | InterPro:TPR_1 | InterPro:TPR_repeat | EnsemblPlantsGene:TraesCS6D01G095600 |
| EnsemblPlants:TraesCS6D01G095600.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr6D:+:60060697..60068352
Molecular Weight (calculated)
103467.0 Da
IEP (calculated)
5.641
GRAVY (calculated)
-0.194
Length
941 amino acids
Sequence
(BLAST)
(BLAST)
001: MQPGMESLQG KESNGAVPDC NGAAAPPAKQ LPEGADALRY ANILRSRNKF ADALQLYTTV LDKDGTNVEA LIGKGICLQA QSLPRQALDC FTEAVKVDPK
101: NACALTHCGM IYKDEGHLVE AAEAYQKARS ADPSYKAAAE FLAIVLTDLG TSLKLAGNTE DGIQKYCEAL EVDSHYAPAY YNLGVVYSEM MQFDVALTCY
201: EKAALERPLY AEAYCNMGVI YKNRGELDAA IACYDRCLTI SPNFEIAKNN MAIALTDLGT KVKIEGDINQ GVAYYKKALF YNWHYADAMY NLGVAYGEML
301: NFEMAIVFYE LALHFNPRCA EACNNLGVIY KDRDNLDKAV ECYQMALSIK PNFSQSLNNL GVVYTVQGKM DAAASMIEKA ILANPTYAEA YNNLGVLYRD
401: AGSITLSVQA YERCLQIDPD SRNAGQNRLL ALNYIDEGSD DKLYDAHREW GKRFMKLYAQ YTSWDNPKVA DRPLVIGYVS PDFFTHSVSY FVEAPLTHHD
501: YTNCKVVVYS GVVKADAKTL RFKDKVLKKG GVWRDIYGID EKKVATLVRE DKVDILVELT GHTANNKLGT MACCPAPIQV TWIGYPNTTG LPAIDYRITD
601: SLADSPNTNQ KHVEELVRLP ESFLCYTPSP EAGPVCPTPA ISNGFITFGS FNNLAKITPK VMQVWARILC AVPNSRLVVK CKPFCCDSIR QKFLSTLEEL
701: GLESLRVDLL PLIHLNHDHM QAYSLMDISL DTFPYAGTTT TCESLYMGVP CVTMAGSVHA HNVGVSLLTK VGLGRLVAKT EDEYVSLALG LASDVSALEE
801: LRKSLRELMI KSPVCDGESF TRGLESAYRS MWHRYCDGDS PALRRLEVLA GEDLDKTAVK HADLEAQRAN ATAEEDNQSP IKKVDATSKG GEPQIMVNHV
901: SSPEGNQALV TAKAQPQMMV NGVSSPHSPS GRCEANGHSS R
101: NACALTHCGM IYKDEGHLVE AAEAYQKARS ADPSYKAAAE FLAIVLTDLG TSLKLAGNTE DGIQKYCEAL EVDSHYAPAY YNLGVVYSEM MQFDVALTCY
201: EKAALERPLY AEAYCNMGVI YKNRGELDAA IACYDRCLTI SPNFEIAKNN MAIALTDLGT KVKIEGDINQ GVAYYKKALF YNWHYADAMY NLGVAYGEML
301: NFEMAIVFYE LALHFNPRCA EACNNLGVIY KDRDNLDKAV ECYQMALSIK PNFSQSLNNL GVVYTVQGKM DAAASMIEKA ILANPTYAEA YNNLGVLYRD
401: AGSITLSVQA YERCLQIDPD SRNAGQNRLL ALNYIDEGSD DKLYDAHREW GKRFMKLYAQ YTSWDNPKVA DRPLVIGYVS PDFFTHSVSY FVEAPLTHHD
501: YTNCKVVVYS GVVKADAKTL RFKDKVLKKG GVWRDIYGID EKKVATLVRE DKVDILVELT GHTANNKLGT MACCPAPIQV TWIGYPNTTG LPAIDYRITD
601: SLADSPNTNQ KHVEELVRLP ESFLCYTPSP EAGPVCPTPA ISNGFITFGS FNNLAKITPK VMQVWARILC AVPNSRLVVK CKPFCCDSIR QKFLSTLEEL
701: GLESLRVDLL PLIHLNHDHM QAYSLMDISL DTFPYAGTTT TCESLYMGVP CVTMAGSVHA HNVGVSLLTK VGLGRLVAKT EDEYVSLALG LASDVSALEE
801: LRKSLRELMI KSPVCDGESF TRGLESAYRS MWHRYCDGDS PALRRLEVLA GEDLDKTAVK HADLEAQRAN ATAEEDNQSP IKKVDATSKG GEPQIMVNHV
901: SSPEGNQALV TAKAQPQMMV NGVSSPHSPS GRCEANGHSS R
001: MVGLEDDTER ERSPVVENGF SNGSRSSSSS AGVLSPSRKV TQGNDTLSYA NILRARNKFA DALALYEAML EKDSKNVEAH IGKGICLQTQ NKGNLAFDCF
101: SEAIRLDPHN ACALTHCGIL HKEEGRLVEA AESYQKALMA DASYKPAAEC LAIVLTDLGT SLKLAGNTQE GIQKYYEALK IDPHYAPAYY NLGVVYSEMM
201: QYDNALSCYE KAALERPMYA EAYCNMGVIY KNRGDLEMAI TCYERCLAVS PNFEIAKNNM AIALTDLGTK VKLEGDVTQG VAYYKKALYY NWHYADAMYN
301: LGVAYGEMLK FDMAIVFYEL AFHFNPHCAE ACNNLGVLYK DRDNLDKAVE CYQMALSIKP NFAQSLNNLG VVYTVQGKMD AAASMIEKAI LANPTYAEAF
401: NNLGVLYRDA GNITMAIDAY EECLKIDPDS RNAGQNRLLA MNYINEGLDD KLFEAHRDWG WRFTRLHPQY TSWDNLKDPE RPITIGYISP DFFTHSVSYF
501: IEAPLTHHDY TKYKVVVYSA VVKADAKTYR FRDKVLKKGG VWKDIYGIDE KKIASMVRED KIDILVELTG HTANNKLGTM ACRPAPVQVT WIGYPNTTGL
601: PTVDYRITDS LADPPDTKQK QVEELVRLPD CFLCYTPSPE AGPVCPTPAL SNGFVTFGSF NNLAKITPKV LQVWARILCA VPNSRLVVKC KPFCCDSIRQ
701: RFLTTLEQLG LESKRVDLLP LILFNHDHMQ AYSLMDISLD TFPYAGTTTT CESLYMGVPC VTMAGSVHAH NVGVSLLTKV GLGHLVAKNE DEYVQLSVDL
801: ASDVTALSKL RMSLRDLMAG SPVCNGPSFA VGLESAYRNM WKKYCKGEVP SLRRMEMLQK EVHDDPLISK DLGPSRVSVT GEATPSLKAN GSAPVPSSLP
901: TQSPQLSKRM DSTS
101: SEAIRLDPHN ACALTHCGIL HKEEGRLVEA AESYQKALMA DASYKPAAEC LAIVLTDLGT SLKLAGNTQE GIQKYYEALK IDPHYAPAYY NLGVVYSEMM
201: QYDNALSCYE KAALERPMYA EAYCNMGVIY KNRGDLEMAI TCYERCLAVS PNFEIAKNNM AIALTDLGTK VKLEGDVTQG VAYYKKALYY NWHYADAMYN
301: LGVAYGEMLK FDMAIVFYEL AFHFNPHCAE ACNNLGVLYK DRDNLDKAVE CYQMALSIKP NFAQSLNNLG VVYTVQGKMD AAASMIEKAI LANPTYAEAF
401: NNLGVLYRDA GNITMAIDAY EECLKIDPDS RNAGQNRLLA MNYINEGLDD KLFEAHRDWG WRFTRLHPQY TSWDNLKDPE RPITIGYISP DFFTHSVSYF
501: IEAPLTHHDY TKYKVVVYSA VVKADAKTYR FRDKVLKKGG VWKDIYGIDE KKIASMVRED KIDILVELTG HTANNKLGTM ACRPAPVQVT WIGYPNTTGL
601: PTVDYRITDS LADPPDTKQK QVEELVRLPD CFLCYTPSPE AGPVCPTPAL SNGFVTFGSF NNLAKITPKV LQVWARILCA VPNSRLVVKC KPFCCDSIRQ
701: RFLTTLEQLG LESKRVDLLP LILFNHDHMQ AYSLMDISLD TFPYAGTTTT CESLYMGVPC VTMAGSVHAH NVGVSLLTKV GLGHLVAKNE DEYVQLSVDL
801: ASDVTALSKL RMSLRDLMAG SPVCNGPSFA VGLESAYRNM WKKYCKGEVP SLRRMEMLQK EVHDDPLISK DLGPSRVSVT GEATPSLKAN GSAPVPSSLP
901: TQSPQLSKRM DSTS
Arabidopsis Description
SPYProbable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Source:UniProtKB/Swiss-Prot;Acc:Q96301]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.